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  5. Sam_g27114

Sam_g27114


Description : not classified & original description: none


Gene families : OG0000858 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000858_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g27114

Target Alias Description ECC score Gene Family Method Actions
Adi_g060062 PUM7, APUM7 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene37289.t1 APUM12, PUM12,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0001.g000500 APUM8, PUM8 not classified & original description: CDS=357-1181 0.03 OrthoFinder output from all 47 species
Azfi_s0091.g042856 APUM12, PUM12 not classified & original description: CDS=226-2520 0.03 OrthoFinder output from all 47 species
GSVIVT01025489001 APUM12, PUM12 Pumilio homolog 12 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0068.g016386 APUM8, PUM8 not classified & original description: CDS=1-2142 0.03 OrthoFinder output from all 47 species
Smo75995 APUM12, PUM12 Pumilio homolog 12 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004664 prephenate dehydratase activity IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006558 L-phenylalanine metabolic process IEP HCCA
BP GO:0006811 monoatomic ion transport IEP HCCA
BP GO:0006820 monoatomic anion transport IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
BP GO:0009072 aromatic amino acid metabolic process IEP HCCA
BP GO:0009073 aromatic amino acid family biosynthetic process IEP HCCA
BP GO:0009094 L-phenylalanine biosynthetic process IEP HCCA
BP GO:0009095 aromatic amino acid family biosynthetic process, prephenate pathway IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
MF GO:0016829 lyase activity IEP HCCA
MF GO:0016835 carbon-oxygen lyase activity IEP HCCA
MF GO:0016836 hydro-lyase activity IEP HCCA
BP GO:0044283 small molecule biosynthetic process IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
BP GO:1901607 alpha-amino acid biosynthetic process IEP HCCA
BP GO:1902221 erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolic process IEP HCCA
BP GO:1902223 erythrose 4-phosphate/phosphoenolpyruvate family amino acid biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR001313 Pumilio_RNA-bd_rpt 579 610
IPR001313 Pumilio_RNA-bd_rpt 802 833
IPR001313 Pumilio_RNA-bd_rpt 620 646
IPR001313 Pumilio_RNA-bd_rpt 763 796
IPR001313 Pumilio_RNA-bd_rpt 729 757
IPR001313 Pumilio_RNA-bd_rpt 655 685
IPR001313 Pumilio_RNA-bd_rpt 690 723
IPR001313 Pumilio_RNA-bd_rpt 543 577
No external refs found!