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  5. Sam_g27139

Sam_g27139


Description : subfamily ABCB transporter & original description: none


Gene families : OG0000048 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g27139

Target Alias Description ECC score Gene Family Method Actions
AT1G02520 PGP11 P-glycoprotein 11 0.03 OrthoFinder output from all 47 species
AT2G47000 ATPGP4, PGP4, ABCB4, MDR4 ATP binding cassette subfamily B4 0.03 OrthoFinder output from all 47 species
AT5G46540 PGP7 P-glycoprotein 7 0.03 OrthoFinder output from all 47 species
Ala_g26174 No alias subfamily ABCB transporter & original description: none 0.02 OrthoFinder output from all 47 species
Als_g18810 PGP2 subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Als_g39233 ABCB19,... subfamily ABCB transporter & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene52651.t1 PGP2, Aspi01Gene52651 subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene62055.t2 ABCB19,... subfamily ABCB transporter & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0039.g026389 PGP11 subfamily ABCB transporter & original description: CDS=323-4378 0.04 OrthoFinder output from all 47 species
Cba_g24784 ABCB19,... subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.02G084300.1 ABCB19,... subfamily ABCB transporter & original description:... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000572.4 ATPGP4, PGP4, ABCB4, MDR4 ABC transporter B family member 4 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020952.7 PGP2 ABC transporter B family member 2 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Dac_g16813 PGP16 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g23401 ABCB19,... subfamily ABCB transporter & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g45466 PGP11 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g46173 No alias subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g47815 PGP11 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Gb_36503 No alias serine carboxypeptidase. subfamily ABCB transporter 0.04 OrthoFinder output from all 47 species
LOC_Os01g29870.1 ATPGP4, PGP4,... ABC transporter B family member 7 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
LOC_Os05g47500.1 PGP9, LOC_Os05g47500 subfamily ABCB transporter 0.02 OrthoFinder output from all 47 species
MA_145496g0010 No alias ABC transporter B family member 15 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
MA_8240705g0010 PGP17 ABC transporter B family member 17 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
MA_8519205g0010 PGP17 ABC transporter B family member 17 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
MA_9148200g0010 No alias ABC transporter B family member 15 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
MA_9589971g0010 PGP10 ABC transporter B family member 10 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Mp2g02910.1 ABCB19,... auxin efflux transporter (ABCB19). subfamily ABCB transporter 0.02 OrthoFinder output from all 47 species
Pir_g47038 PGP9 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g04001 ABCB19,... subfamily ABCB transporter & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0055.g014489 PGP6 subfamily ABCB transporter & original description: CDS=1-4245 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0125.g021690 ABCB19,... not classified & original description: CDS=77-2374 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0809.g027741 PGP20 subfamily ABCB transporter & original description: CDS=203-3700 0.02 OrthoFinder output from all 47 species
Smo123915 PGP11 Solute transport.primary active transport.ABC... 0.02 OrthoFinder output from all 47 species
Smo230134 ABCB19,... Solute transport.primary active transport.ABC... 0.02 OrthoFinder output from all 47 species
Solyc04g010310.4.1 PGP20, Solyc04g010310 subfamily ABCB transporter 0.04 OrthoFinder output from all 47 species
Spa_g03247 ATPGP4, PGP4, ABCB4, MDR4 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g18285 ABCB19,... subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e017444_P002 PGP21, Zm00001e017444 subfamily ABCB transporter 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEP HCCA
BP GO:0006720 isoprenoid metabolic process IEP HCCA
BP GO:0008299 isoprenoid biosynthetic process IEP HCCA
BP GO:0008610 lipid biosynthetic process IEP HCCA
MF GO:0016791 phosphatase activity IEP HCCA
MF GO:0042578 phosphoric ester hydrolase activity IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
BP GO:0044255 cellular lipid metabolic process IEP HCCA
MF GO:0140359 ABC-type transporter activity IEP HCCA
InterPro domains Description Start Stop
IPR003439 ABC_transporter-like_ATP-bd 418 561
IPR011527 ABC1_TM_dom 75 347
IPR011527 ABC1_TM_dom 806 1064
IPR003439 ABC_transporter-like_ATP-bd 1137 1284
No external refs found!