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  5. Sam_g27190

Sam_g27190


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g27190

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00004p00076010 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g13650... 0.02 OrthoFinder output from all 47 species
AMTR_s00078p00067180 EMB2261,... Pentatricopeptide repeat-containing protein At2g46050,... 0.02 OrthoFinder output from all 47 species
AT5G04780 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g004488 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g101211 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g44555 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g09700 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g14340 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g22711 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g24093 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g24099 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g32891 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g33237 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g05739 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g06363 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g07375 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g08105 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Als_g18476 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g21031 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g27948 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g29166 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g30790 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g09002 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g23679 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene66061.t1 Aspi01Gene66061 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene66850.t1 Aspi01Gene66850 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0021.g015640 No alias not classified & original description: CDS=1-1965 0.03 OrthoFinder output from all 47 species
Cba_g07735 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g13797 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g20133 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g24173 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g29958 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.07G067800.1 Ceric.07G067800 not classified & original description: pacid=50627089... 0.02 OrthoFinder output from all 47 species
Ceric.09G032600.1 Ceric.09G032600 not classified & original description: pacid=50587514... 0.03 OrthoFinder output from all 47 species
Ceric.16G016300.1 Ceric.16G016300 not classified & original description: pacid=50589149... 0.03 OrthoFinder output from all 47 species
Ceric.20G001900.1 Ceric.20G001900 not classified & original description: pacid=50565969... 0.03 OrthoFinder output from all 47 species
Ceric.21G080700.1 Ceric.21G080700 not classified & original description: pacid=50603857... 0.02 OrthoFinder output from all 47 species
Ceric.23G060300.1 CRR22, Ceric.23G060300 not classified & original description: pacid=50610371... 0.02 OrthoFinder output from all 47 species
Dac_g27799 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g16947 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g12101 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g36368 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g12221 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g17807 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g20660 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01023345001 No alias Pentatricopeptide repeat-containing protein At4g33990... 0.02 OrthoFinder output from all 47 species
LOC_Os01g01115.1 LOC_Os01g01115 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
LOC_Os06g41040.1 LOC_Os06g41040 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
Len_g04264 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g04815 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g18593 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g14080 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g04397 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g16027 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g01896 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g12697 REME1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g30445 REME1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g10363 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g51546 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g64685 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g29483 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g32992 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g39260 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g22472 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g26608 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g29586 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g38969 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g39629 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo79732 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.02 OrthoFinder output from all 47 species
Tin_g06087 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g13647 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g29210 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g35082 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e023800_P003 PDE247, CLB19,... RNA editing factor (CLB19) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003697 single-stranded DNA binding IEP HCCA
CC GO:0008303 caspase complex IEP HCCA
BP GO:0016255 attachment of GPI anchor to protein IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
CC GO:0042765 GPI-anchor transamidase complex IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
CC GO:0140534 endoplasmic reticulum protein-containing complex IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1905368 peptidase complex IEP HCCA
CC GO:1905369 endopeptidase complex IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 78 94
IPR002885 Pentatricopeptide_repeat 548 574
IPR002885 Pentatricopeptide_repeat 717 740
IPR002885 Pentatricopeptide_repeat 642 688
IPR002885 Pentatricopeptide_repeat 178 224
IPR002885 Pentatricopeptide_repeat 278 327
IPR002885 Pentatricopeptide_repeat 477 524
IPR002885 Pentatricopeptide_repeat 377 421
No external refs found!