Sam_g27570

Description : PRC2-recruiting factor (TRB) of PRC2 histone methylation complex & original description: none

Gene families : OG0000994 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000994_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sam_g27570

Target	Alias	Description	ECC score	Gene Family Method
AT5G67580	ATTBP3, TRB2,...	Homeodomain-like/winged-helix DNA-binding family protein	0.02	OrthoFinder output from all 47 species
Adi_g028539	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g058884	ATTRB1, TRB1	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Als_g20024	ATTRB1, TRB1	PRC2-recruiting factor (TRB) of PRC2 histone methylation...	0.03	OrthoFinder output from all 47 species
Azfi_s0006.g010067	ATTRB1, TRB1	not classified & original description: CDS=853-1392	0.04	OrthoFinder output from all 47 species
Cba_g12893	ATTRB1, TRB1	PRC2-recruiting factor (TRB) of PRC2 histone methylation...	0.03	OrthoFinder output from all 47 species
Len_g16921	ATTRB1, TRB1	PRC2-recruiting factor (TRB) of PRC2 histone methylation...	0.03	OrthoFinder output from all 47 species
MA_226g0020	No alias	transcription factor (MYB-related)	0.01	OrthoFinder output from all 47 species
Pnu_g01613	ATTRB1, TRB1	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g52367	No alias	PRC2-recruiting factor (TRB) of PRC2 histone methylation...	0.05	OrthoFinder output from all 47 species
Tin_g03988	ATTRB1, TRB1	not classified & original description: none	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0000786	nucleosome	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006325	chromatin organization	None	Extended
BP	GO:0006334	nucleosome assembly	IEA	Interproscan
BP	GO:0006338	chromatin remodeling	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
CC	GO:0032993	protein-DNA complex	None	Extended
BP	GO:0034728	nucleosome organization	None	Extended
BP	GO:0043933	protein-containing complex organization	None	Extended
CC	GO:0044815	DNA packaging complex	None	Extended
BP	GO:0065003	protein-containing complex assembly	None	Extended
BP	GO:0065004	protein-DNA complex assembly	None	Extended
BP	GO:0071824	protein-DNA complex subunit organization	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000160	phosphorelay signal transduction system	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0004252	serine-type endopeptidase activity	IEP	HCCA
BP	GO:0035556	intracellular signal transduction	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR005818	Histone_H1/H5_H15	117	174
IPR001005	SANT/Myb	5	56

External Links

No external refs found!