Sam_g27581

Description : basal transcription factor *(TFIa/RRN3) & original description: none

Gene families : OG0004620 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004620_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sam_g27581

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00022p00154500	evm_27.TU.AmTr_v1...	RNA biosynthesis.RNA polymerase I-dependent...	0.02	OrthoFinder output from all 47 species
AT2G34750	No alias	RNA polymerase I specific transcription initiation...	0.02	OrthoFinder output from all 47 species
Aspi01Gene29471.t1	Aspi01Gene29471	basal transcription factor *(TFIa/RRN3) & original...	0.03	OrthoFinder output from all 47 species
Ceric.13G084500.1	Ceric.13G084500	basal transcription factor *(TFIa/RRN3) & original...	0.03	OrthoFinder output from all 47 species
Dac_g11606	No alias	basal transcription factor *(TFIa/RRN3) & original...	0.04	OrthoFinder output from all 47 species
LOC_Os06g47350.2	LOC_Os06g47350	basal transcription factor (TFIa/RRN3)	0.03	OrthoFinder output from all 47 species
Lfl_g06620	No alias	basal transcription factor *(TFIa/RRN3) & original...	0.02	OrthoFinder output from all 47 species
MA_112855g0010	No alias	basal transcription factor (TFIa/RRN3)	0.02	OrthoFinder output from all 47 species
MA_158801g0010	No alias	basal transcription factor (TFIa/RRN3)	0.02	OrthoFinder output from all 47 species
Mp6g17000.1	No alias	basal transcription factor (TFIa/RRN3)	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0188.g025169	No alias	basal transcription factor *(TFIa/RRN3) & original...	0.02	OrthoFinder output from all 47 species
Solyc02g082340.3.1	Solyc02g082340	basal transcription factor (TFIa/RRN3)	0.04	OrthoFinder output from all 47 species
Zm00001e013105_P001	Zm00001e013105	basal transcription factor (TFIa/RRN3)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0001181	RNA polymerase I general transcription initiation factor activity	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006352	DNA-templated transcription initiation	None	Extended
BP	GO:0006361	transcription initiation at RNA polymerase I promoter	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0140223	general transcription initiation factor activity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0004386	helicase activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
BP	GO:0006996	organelle organization	IEP	HCCA
BP	GO:0007062	sister chromatid cohesion	IEP	HCCA
BP	GO:0007064	mitotic sister chromatid cohesion	IEP	HCCA
BP	GO:0022402	cell cycle process	IEP	HCCA
BP	GO:0051276	chromosome organization	IEP	HCCA
MF	GO:0051536	iron-sulfur cluster binding	IEP	HCCA
MF	GO:0051540	metal cluster binding	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA
BP	GO:1903047	mitotic cell cycle process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007991	RNA_pol_I_trans_ini_fac_RRN3	24	568

External Links

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Sam_g27581

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation