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  5. Sam_g27632

Sam_g27632


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g27632

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00217860 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
AMTR_s00029p00248070 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g33680... 0.03 OrthoFinder output from all 47 species
AT2G20540 MEF21 mitochondrial editing factor 21 0.03 OrthoFinder output from all 47 species
Als_g39618 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g27542 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene61369.t1 CRR22, Aspi01Gene61369 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g05615 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dac_g12138 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g21016 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g12492 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g15309 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g18545 OTP82 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g26038 EMB2261 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g03793 EMB2261 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g13666 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc03g025700.2.1 Solyc03g025700 OTP70 plastidial RNA splicing factor 0.03 OrthoFinder output from all 47 species
Spa_g56307 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g38826 REME1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e015727_P001 Zm00001e015727 Pentatricopeptide repeat-containing protein At5g66520... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 387 414
IPR002885 Pentatricopeptide_repeat 288 311
IPR002885 Pentatricopeptide_repeat 490 512
IPR002885 Pentatricopeptide_repeat 590 615
IPR002885 Pentatricopeptide_repeat 415 462
IPR002885 Pentatricopeptide_repeat 214 260
IPR002885 Pentatricopeptide_repeat 314 360
IPR002885 Pentatricopeptide_repeat 515 563
IPR046848 E_motif 633 681
No external refs found!