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  5. Sam_g27886

Sam_g27886


Description : not classified & original description: none


Gene families : OG0003994 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003994_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g27886

Target Alias Description ECC score Gene Family Method Actions
AT3G06530 No alias ARM repeat superfamily protein 0.06 OrthoFinder output from all 47 species
Ala_g19835 No alias SSU processome assembly factor *(UTP10) & original... 0.02 OrthoFinder output from all 47 species
Aspi01Gene50223.t1 Aspi01Gene50223 SSU processome assembly factor *(UTP10) & original... 0.03 OrthoFinder output from all 47 species
Ceric.35G057300.1 Ceric.35G057300 SSU processome assembly factor *(UTP10) & original... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000074.2 No alias Uncharacterized protein At3g06530 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Cre12.g548000 No alias Uncharacterized protein At3g06530 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
Dcu_g07784 No alias SSU processome assembly factor *(UTP10) & original... 0.04 OrthoFinder output from all 47 species
GSVIVT01013976001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.02 OrthoFinder output from all 47 species
LOC_Os04g46310.1 LOC_Os04g46310 SSU processome assembly factor (UTP10) 0.06 OrthoFinder output from all 47 species
Lfl_g18330 No alias SSU processome assembly factor *(UTP10) & original... 0.03 OrthoFinder output from all 47 species
MA_10431891g0010 No alias Uncharacterized protein At3g06530 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
MA_735g0010 No alias Uncharacterized protein At3g06530 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Mp1g06160.1 No alias SSU processome assembly factor (UTP10) 0.03 OrthoFinder output from all 47 species
Pir_g09831 No alias SSU processome assembly factor *(UTP10) & original... 0.02 OrthoFinder output from all 47 species
Smo438493 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.05 OrthoFinder output from all 47 species
Solyc03g093480.3.1 Solyc03g093480 SSU processome assembly factor (UTP10) 0.05 OrthoFinder output from all 47 species
Spa_g26502 No alias SSU processome assembly factor *(UTP10) & original... 0.03 OrthoFinder output from all 47 species
Tin_g20111 No alias SSU processome assembly factor *(UTP10) & original... 0.03 OrthoFinder output from all 47 species
Zm00001e016831_P001 Zm00001e016831 SSU processome assembly factor (UTP10) 0.09 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR022125 U3snoRNP10_N 232 353
No external refs found!