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  5. Sam_g28593

Sam_g28593


Description : E3 ubiquitin ligase *(BRIZ) & original description: none


Gene families : OG0004050 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004050_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g28593
Cluster HCCA: Cluster_181

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00046p00080660 BRIZ2,... Protein degradation.peptide tagging.Ubiquitin... 0.02 OrthoFinder output from all 47 species
Aop_g03802 BRIZ2 E3 ubiquitin ligase *(BRIZ) & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g21836 BRIZ2 E3 ubiquitin ligase *(BRIZ) & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.14G071700.1 BRIZ2, Ceric.14G071700 E3 ubiquitin ligase *(BRIZ) & original description:... 0.02 OrthoFinder output from all 47 species
Cre10.g454400 BRIZ2 Protein degradation.peptide tagging.Ubiquitin... 0.02 OrthoFinder output from all 47 species
GSVIVT01013625001 BRIZ2 Protein degradation.peptide tagging.Ubiquitin... 0.02 OrthoFinder output from all 47 species
Msp_g01202 BRIZ2 E3 ubiquitin ligase *(BRIZ) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g26270 BRIZ2 E3 ubiquitin ligase *(BRIZ) & original description: none 0.02 OrthoFinder output from all 47 species
Smo403400 BRIZ2 Protein degradation.peptide tagging.Ubiquitin... 0.02 OrthoFinder output from all 47 species
Solyc03g120000.3.1 BRIZ2, Solyc03g120000 RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
Spa_g12324 BRIZ2 E3 ubiquitin ligase *(BRIZ) & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g03371 BRIZ2 E3 ubiquiTin ligase *(BRIZ) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e013868_P001 BRIZ2, Zm00001e013868 RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004356 glutamate-ammonia ligase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
CC GO:0005669 transcription factor TFIID complex IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0016211 ammonia ligase activity IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
MF GO:0016880 acid-ammonia (or amide) ligase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
CC GO:0090575 RNA polymerase II transcription regulator complex IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR001607 Znf_UBP 237 296
IPR011422 BRAP2/ETP1_RRM 77 173
IPR001841 Znf_RING 185 226
No external refs found!