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  5. Sam_g28608

Sam_g28608


Description : not classified & original description: none


Gene families : OG0000162 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000162_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g28608
Cluster HCCA: Cluster_33

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00004p00169780 evm_27.TU.AmTr_v1... Uncharacterized protein At5g39865 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AMTR_s00153p00027650 evm_27.TU.AmTr_v1... Uncharacterized protein At5g39865 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Aev_g25963 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g22121 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g08318 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.02G070100.1 Ceric.02G070100 not classified & original description: pacid=50585365... 0.03 OrthoFinder output from all 47 species
Dac_g15917 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g07069 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g07616 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g14439 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g26578 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01024682001 No alias Uncharacterized protein At3g28850 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
LOC_Os03g44650.1 LOC_Os03g44650 Uncharacterized protein At5g39865 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Len_g08448 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g17714 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g24174 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_111367g0010 No alias Uncharacterized protein At5g39865 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
MA_48594g0010 No alias actin filament-bundling factor (THRUMIN) 0.03 OrthoFinder output from all 47 species
MA_68307g0010 No alias Uncharacterized protein At5g39865 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Mp3g04860.1 No alias actin filament-bundling factor (THRUMIN) 0.02 OrthoFinder output from all 47 species
Msp_g14310 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g07309 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g19626 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g61326 No alias actin filament-bundling factor *(THRUMIN) & original... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0011.g005257 No alias not classified & original description: CDS=3249-5144 0.03 OrthoFinder output from all 47 species
Solyc11g006430.1.1 Solyc11g006430 Uncharacterized protein At5g39865 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Spa_g20458 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g24111 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Spa_g50389 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e004996_P001 Zm00001e004996 Uncharacterized protein At5g39865 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Zm00001e006789_P001 Zm00001e006789 Uncharacterized protein At5g39865 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Zm00001e012391_P001 Zm00001e012391 Uncharacterized protein At5g39865 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Zm00001e025414_P001 Zm00001e025414 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Zm00001e032843_P001 Zm00001e032843 Uncharacterized protein At5g39865 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity IEP HCCA
BP GO:0000271 polysaccharide biosynthetic process IEP HCCA
BP GO:0001932 regulation of protein phosphorylation IEP HCCA
MF GO:0004568 chitinase activity IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006022 aminoglycan metabolic process IEP HCCA
BP GO:0006026 aminoglycan catabolic process IEP HCCA
BP GO:0006030 chitin metabolic process IEP HCCA
BP GO:0006032 chitin catabolic process IEP HCCA
BP GO:0006040 amino sugar metabolic process IEP HCCA
BP GO:0006073 cellular glucan metabolic process IEP HCCA
MF GO:0008194 UDP-glycosyltransferase activity IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009250 glucan biosynthetic process IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
MF GO:0016759 cellulose synthase activity IEP HCCA
MF GO:0016760 cellulose synthase (UDP-forming) activity IEP HCCA
BP GO:0016998 cell wall macromolecule catabolic process IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
BP GO:0019220 regulation of phosphate metabolic process IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
MF GO:0019900 kinase binding IEP HCCA
MF GO:0019901 protein kinase binding IEP HCCA
BP GO:0030243 cellulose metabolic process IEP HCCA
BP GO:0030244 cellulose biosynthetic process IEP HCCA
BP GO:0031399 regulation of protein modification process IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0033692 cellular polysaccharide biosynthetic process IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
MF GO:0035251 UDP-glucosyltransferase activity IEP HCCA
BP GO:0042325 regulation of phosphorylation IEP HCCA
BP GO:0043549 regulation of kinase activity IEP HCCA
BP GO:0044036 cell wall macromolecule metabolic process IEP HCCA
BP GO:0044042 glucan metabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0045859 regulation of protein kinase activity IEP HCCA
BP GO:0046348 amino sugar catabolic process IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
BP GO:0050790 regulation of catalytic activity IEP HCCA
BP GO:0051174 regulation of phosphorus metabolic process IEP HCCA
BP GO:0051246 regulation of protein metabolic process IEP HCCA
BP GO:0051273 beta-glucan metabolic process IEP HCCA
BP GO:0051274 beta-glucan biosynthetic process IEP HCCA
BP GO:0051338 regulation of transferase activity IEP HCCA
BP GO:0051726 regulation of cell cycle IEP HCCA
BP GO:0065009 regulation of molecular function IEP HCCA
BP GO:0071900 regulation of protein serine/threonine kinase activity IEP HCCA
BP GO:1901071 glucosamine-containing compound metabolic process IEP HCCA
BP GO:1901072 glucosamine-containing compound catabolic process IEP HCCA
BP GO:1901136 carbohydrate derivative catabolic process IEP HCCA
BP GO:1901565 organonitrogen compound catabolic process IEP HCCA
BP GO:1904029 regulation of cyclin-dependent protein kinase activity IEP HCCA
InterPro domains Description Start Stop
IPR002109 Glutaredoxin 442 512
No external refs found!