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  5. Sam_g28646

Sam_g28646


Description : protein involved in cytochrome b6/f complex assembly *(HCF164) & original description: none


Gene families : OG0006010 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006010_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g28646
Cluster HCCA: Cluster_55

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00059p00183340 HCF164,... Photosynthesis.photophosphorylation.cytochrome b6/f... 0.05 OrthoFinder output from all 47 species
AT4G37200 HCF164 Thioredoxin superfamily protein 0.04 OrthoFinder output from all 47 species
Ala_g01048 HCF164 protein involved in cytochrome b6/f complex assembly... 0.03 OrthoFinder output from all 47 species
Als_g11520 HCF164 protein involved in cytochrome b6/f complex assembly... 0.05 OrthoFinder output from all 47 species
Aop_g12552 HCF164 protein involved in cytochrome b6/f complex assembly... 0.05 OrthoFinder output from all 47 species
Aspi01Gene48086.t1 HCF164, Aspi01Gene48086 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0092.g043076 HCF164 protein involved in cytochrome b6/f complex assembly... 0.02 OrthoFinder output from all 47 species
Dac_g03170 HCF164 protein involved in cytochrome b6/f complex assembly... 0.07 OrthoFinder output from all 47 species
Dcu_g47105 HCF164 protein involved in cytochrome b6/f complex assembly... 0.04 OrthoFinder output from all 47 species
Dde_g01274 HCF164 protein involved in cytochrome b6/f complex assembly... 0.05 OrthoFinder output from all 47 species
Ehy_g06408 HCF164 protein involved in cytochrome b6/f complex assembly... 0.04 OrthoFinder output from all 47 species
Ehy_g23323 HCF164 protein involved in cytochrome b6/f complex assembly... 0.02 OrthoFinder output from all 47 species
LOC_Os03g55820.1 HCF164, LOC_Os03g55820 HCF164 protein involved in cytochrome b6/f complex assembly 0.04 OrthoFinder output from all 47 species
Lfl_g02690 HCF164 protein involved in cytochrome b6/f complex assembly... 0.03 OrthoFinder output from all 47 species
Mp4g10810.1 HCF164 HCF164 protein involved in cytochrome b6/f complex assembly 0.06 OrthoFinder output from all 47 species
Nbi_g12738 HCF164 protein involved in cytochrome b6/f complex assembly... 0.07 OrthoFinder output from all 47 species
Ore_g25849 HCF164 protein involved in cytochrome b6/f complex assembly... 0.03 OrthoFinder output from all 47 species
Pir_g14034 HCF164 protein involved in cytochrome b6/f complex assembly... 0.06 OrthoFinder output from all 47 species
Smo159329 HCF164 Photosynthesis.photophosphorylation.cytochrome b6/f... 0.02 OrthoFinder output from all 47 species
Solyc07g064940.3.1 HCF164, Solyc07g064940 HCF164 protein involved in cytochrome b6/f complex assembly 0.02 OrthoFinder output from all 47 species
Spa_g17264 HCF164 protein involved in cytochrome b6/f complex assembly... 0.03 OrthoFinder output from all 47 species
Zm00001e011960_P001 HCF164, Zm00001e011960 HCF164 protein involved in cytochrome b6/f complex assembly 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
MF GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP HCCA
InterPro domains Description Start Stop
IPR013766 Thioredoxin_domain 144 237
No external refs found!