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  5. Lfl_g28234

Lfl_g28234


Description : component *(eL40) of large ribosomal-subunit (LSU) proteome & original description: none


Gene families : OG0000054 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g28234
Cluster HCCA: Cluster_120

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00017p00094950 UBQ6,... Protein biosynthesis.cytosolic ribosome.small subunit... 0.02 OrthoFinder output from all 47 species
AMTR_s00095p00146440 UBQ6,... Protein biosynthesis.cytosolic ribosome.small subunit... 0.02 OrthoFinder output from all 47 species
AT2G36170 No alias Ubiquitin supergroup;Ribosomal protein L40e 0.03 OrthoFinder output from all 47 species
AT2G47110 UBQ6 ubiquitin 6 0.04 OrthoFinder output from all 47 species
AT3G52590 UBQ1, EMB2167,... ubiquitin extension protein 1 0.04 OrthoFinder output from all 47 species
AT3G62250 UBQ5 ubiquitin 5 0.04 OrthoFinder output from all 47 species
AT4G05320 UBQ10 polyubiquitin 10 0.02 OrthoFinder output from all 47 species
AT5G03240 UBQ3 polyubiquitin 3 0.02 OrthoFinder output from all 47 species
Adi_g023730 No alias component *(eL40) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Adi_g119828 UBQ11 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g13089 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g25753 UBQ14 UBQ ubiquitin-fold protein & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g40141 UBQ10 UBQ ubiquitin-fold protein & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g22856 UBQ6 component *(eS31) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Ala_g31252 No alias component *(eL40) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Als_g31640 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.02 OrthoFinder output from all 47 species
Als_g49626 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g30723 No alias component *(eL40) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Aop_g64104 UBQ6 component *(eS31) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Aspi01Gene23081.t1 UBQ11, Aspi01Gene23081 UBQ ubiquitin-fold protein & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g43648 RUB1, ATRUB1, NEDD8 RUB ubiquitin-fold protein & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g45522 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.21G057400.1 UBQ6, Ceric.21G057400 component *(eS31) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Ceric.24G048500.1 UBQ11, Ceric.24G048500 UBQ ubiquitin-fold protein & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.27G040600.1 Ceric.27G040600 component *(eL40) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00022075.50 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.02 OrthoFinder output from all 47 species
Cre06.g273600 UBQ6 Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 OrthoFinder output from all 47 species
Dac_g26865 UBQ11 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g29687 No alias component *(eL40) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Ehy_g28123 UBQ11 not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01012906001 No alias Ubiquitin-NEDD8-like protein RUB1 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
GSVIVT01038617001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 OrthoFinder output from all 47 species
Gb_41257 No alias component RPL40 of LSU proteome component 0.03 OrthoFinder output from all 47 species
LOC_Os01g22490.1 UBQ6, LOC_Os01g22490 component RPS27a of SSU proteome 0.02 OrthoFinder output from all 47 species
LOC_Os05g06770.1 UBQ6, LOC_Os05g06770 component RPS27a of SSU proteome 0.05 OrthoFinder output from all 47 species
LOC_Os08g08700.1 LOC_Os08g08700 Polyubiquitin 9 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Lfl_g16898 RUB1, ATRUB1, NEDD8 RUB ubiquitin-fold protein & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g22941 UBQ11 not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_529552g0010 UBQ6 component RPS27a of SSU proteome 0.04 OrthoFinder output from all 47 species
Mp3g22950.1 UBQ10 ubiquitin-fold protein (UBQ) 0.02 OrthoFinder output from all 47 species
Mp7g12760.1 UBQ6 component RPS27a of SSU proteome 0.03 OrthoFinder output from all 47 species
Mp8g00780.1 No alias component RPL40 of LSU proteome component 0.03 OrthoFinder output from all 47 species
Mp8g11720.1 RUB1, ATRUB1, NEDD8 Ubiquitin-NEDD8-like protein RUB1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Msp_g07973 UBQ6 component *(eS31) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Msp_g09233 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g38968 No alias component *(eL40) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Ore_g41611 RUB1, ATRUB1, NEDD8 RUB ubiquitin-fold protein & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g38540 UBQ11 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pp3c10_25270V3.1 Pp3c10_25270 ubiquitin extension protein 1 0.02 OrthoFinder output from all 47 species
Pp3c12_5640V3.1 UBQ6, Pp3c12_5640 ubiquitin 6 0.03 OrthoFinder output from all 47 species
Pp3c20_23170V3.1 Pp3c20_23170 ubiquitin extension protein 1 0.02 OrthoFinder output from all 47 species
Pp3c4_11430V3.1 UBQ14, Pp3c4_11430 polyubiquitin 10 0.01 OrthoFinder output from all 47 species
Pp3c4_19000V3.1 UBQ6, Pp3c4_19000 ubiquitin 6 0.02 OrthoFinder output from all 47 species
Pp3c8_14230V3.1 UBQ6, Pp3c8_14230 ubiquitin 6 0.01 OrthoFinder output from all 47 species
Ppi_g14196 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g42667 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g07360 No alias component *(eS31) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Sam_g07364 No alias component *(eL40) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Sam_g20114 No alias component *(eS31) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Smo111605 UBQ6 Protein biosynthesis.cytosolic ribosome.small subunit... 0.04 OrthoFinder output from all 47 species
Smo271198 UBQ4 Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
Solyc01g068045.1.1 UBQ6, Solyc01g068045 component RPS27a of SSU proteome 0.02 OrthoFinder output from all 47 species
Solyc03g082570.4.1 Solyc03g082570 component RPL40 of LSU proteome component 0.03 OrthoFinder output from all 47 species
Solyc08g008590.4.1 Solyc08g008590 component RPL40 of LSU proteome component 0.02 OrthoFinder output from all 47 species
Solyc08g083120.3.1 Solyc08g083120 component RPL40 of LSU proteome component 0.03 OrthoFinder output from all 47 species
Solyc12g098940.2.1 UBQ6, Solyc12g098940 component RPS27a of SSU proteome 0.02 OrthoFinder output from all 47 species
Solyc12g099025.1.1 UBQ6, Solyc12g099025 component RPS27a of SSU proteome 0.02 OrthoFinder output from all 47 species
Spa_g29603 UBQ6 component *(eS31) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Spa_g56402 UBQ6 component *(eS31) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Tin_g11734 UBQ6 component *(eS31) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Tin_g46317 UBQ11 UBQ ubiquiTin-fold protein & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g46338 UBQ14 UBQ ubiquiTin-fold protein & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e009474_P001 Zm00001e009474 component RPL40 of LSU proteome component 0.02 OrthoFinder output from all 47 species
Zm00001e026237_P001 UBQ6, Zm00001e026237 component RPS27a of SSU proteome 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005750 mitochondrial respiratory chain complex III IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006091 generation of precursor metabolites and energy IEP HCCA
BP GO:0006122 mitochondrial electron transport, ubiquinol to cytochrome c IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009060 aerobic respiration IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0015980 energy derivation by oxidation of organic compounds IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0019646 aerobic electron transport chain IEP HCCA
BP GO:0022900 electron transport chain IEP HCCA
BP GO:0022904 respiratory electron transport chain IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
CC GO:0045275 respiratory chain complex III IEP HCCA
BP GO:0045333 cellular respiration IEP HCCA
CC GO:0070069 cytochrome complex IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:0098798 mitochondrial protein-containing complex IEP HCCA
CC GO:0098800 inner mitochondrial membrane protein complex IEP HCCA
CC GO:0098803 respiratory chain complex IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1902495 transmembrane transporter complex IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
CC GO:1990351 transporter complex IEP HCCA
InterPro domains Description Start Stop
IPR001975 Ribosomal_L40e 71 120
IPR000626 Ubiquitin-like_dom 1 67
No external refs found!