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  5. Sam_g28767

Sam_g28767


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g28767

Target Alias Description ECC score Gene Family Method Actions
AT2G33680 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
AT3G20730 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g003740 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g004453 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g004482 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g005534 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g005725 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g009422 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g009543 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g010668 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g013425 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g036564 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g036621 REME1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g036763 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g069206 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g075417 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g078542 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g085203 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g099249 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g06254 PTAC9, OSB2 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g21991 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g42281 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g48329 OSB3 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g48795 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g07631 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g22600 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g23642 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g25481 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g30892 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g34402 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g36021 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g36544 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g12718 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g30199 REME1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g07409 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g16102 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g17095 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g27232 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g27295 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g37979 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g16384 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g18150 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g28525 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene02401.t1 EMB2758, Aspi01Gene02401 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene07836.t1 REME1, Aspi01Gene07836 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene08600.t1 Aspi01Gene08600 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene08612.t1 Aspi01Gene08612 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene14860.t1 Aspi01Gene14860 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene25991.t2 Aspi01Gene25991 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene28051.t3 Aspi01Gene28051 ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene28610.t2 REME1, Aspi01Gene28610 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene33635.t1 Aspi01Gene33635 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene45795.t1 Aspi01Gene45795 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0010.g012416 No alias not classified & original description: CDS=1-1722 0.03 OrthoFinder output from all 47 species
Azfi_s0011.g012535 No alias not classified & original description: CDS=1-2328 0.03 OrthoFinder output from all 47 species
Azfi_s0166.g054406 No alias not classified & original description: CDS=1-3468 0.03 OrthoFinder output from all 47 species
Azfi_s0658.g081287 CRR22 not classified & original description: CDS=1-1986 0.03 OrthoFinder output from all 47 species
Cba_g02684 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g07724 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g15323 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g20438 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g30018 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g34641 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g45673 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g75132 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g75784 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.05G079500.1 Ceric.05G079500 not classified & original description: pacid=50579193... 0.02 OrthoFinder output from all 47 species
Ceric.28G001700.1 Ceric.28G001700 not classified & original description: pacid=50570577... 0.02 OrthoFinder output from all 47 species
Dac_g44991 LOI1, MEF11 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g06376 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g08759 REME1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g08927 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g12220 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g16864 EMB2261 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g21411 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g35844 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g39633 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g45918 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g03842 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g16081 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g16413 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g26014 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g26159 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g36877 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g51283 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g04950 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g12413 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g15613 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g17712 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g19509 OTP82 not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01008922001 No alias Pentatricopeptide repeat-containing protein At4g08210... 0.02 OrthoFinder output from all 47 species
GSVIVT01027525001 LPA66 Pentatricopeptide repeat-containing protein At4g21065... 0.02 OrthoFinder output from all 47 species
LOC_Os03g20190.1 LOC_Os03g20190 Pentatricopeptide repeat-containing protein At1g56690,... 0.02 OrthoFinder output from all 47 species
LOC_Os03g43420.1 OSB1, LOC_Os03g43420 ssDNA-binding protein (OSB) 0.02 OrthoFinder output from all 47 species
LOC_Os03g62400.1 LOC_Os03g62400 Pentatricopeptide repeat-containing protein At3g13880... 0.03 OrthoFinder output from all 47 species
LOC_Os04g58980.1 LOC_Os04g58980 Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
LOC_Os06g47920.1 LOC_Os06g47920 Pentatricopeptide repeat-containing protein At5g44230... 0.03 OrthoFinder output from all 47 species
Len_g14977 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g17558 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g33285 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g54500 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g59884 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g06127 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07288 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07749 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g18570 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g33318 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_20782g0010 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.02 OrthoFinder output from all 47 species
Msp_g13253 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g22512 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g28351 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g28772 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g34536 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g36814 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g15698 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g02390 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g04708 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g12341 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g14351 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g17858 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g24617 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g27030 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g36349 PTAC9, OSB2 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g39910 DOT4 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g41725 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g03104 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g03458 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g22600 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g22825 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g27694 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g29965 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g30309 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g30607 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pp3c17_4890V3.1 Pp3c17_4890 mitochondrial editing factor 22 0.01 OrthoFinder output from all 47 species
Ppi_g06968 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g18809 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g53933 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g53950 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g62708 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0033.g011031 No alias not classified & original description: CDS=1-2574 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0059.g015029 No alias not classified & original description: CDS=1-2931 0.02 OrthoFinder output from all 47 species
Sam_g03385 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g08102 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g13631 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g27930 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g29713 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g30171 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g36592 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc03g006990.1.1 Solyc03g006990 Pentatricopeptide repeat-containing protein At5g66520... 0.02 OrthoFinder output from all 47 species
Spa_g07598 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g18446 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g51341 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g52415 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g04130 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g10578 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g13336 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g17148 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g21192 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g23468 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e013166_P001 Zm00001e013166 Pentatricopeptide repeat-containing protein At4g14820... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 248 270
IPR002885 Pentatricopeptide_repeat 451 473
IPR002885 Pentatricopeptide_repeat 147 170
IPR002885 Pentatricopeptide_repeat 71 118
IPR002885 Pentatricopeptide_repeat 274 320
IPR002885 Pentatricopeptide_repeat 172 220
IPR002885 Pentatricopeptide_repeat 374 421
No external refs found!