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  5. Sam_g29386

Sam_g29386


Description : subfamily ABCG transporter & original description: none


Gene families : OG0000438 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000438_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g29386
Cluster HCCA: Cluster_132

Target Alias Description ECC score Gene Family Method Actions
Als_g05454 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g06567 No alias subfamily ABCG transporter & original description: none 0.03 OrthoFinder output from all 47 species
Gb_26434 ABCG14 cytokinin transporter (ABCG14). subfamily ABCG transporter 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0062.g015589 No alias not classified & original description: CDS=22-1557 0.02 OrthoFinder output from all 47 species
Zm00001e024529_P001 ABCG25,... subfamily ABCG transporter 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006810 transport IEP HCCA
CC GO:0016020 membrane IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
InterPro domains Description Start Stop
IPR013525 ABC_2_trans 695 758
IPR013525 ABC_2_trans 526 671
IPR003439 ABC_transporter-like_ATP-bd 182 334
No external refs found!