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  5. Sam_g29548

Sam_g29548


Description : ATP-dependent metalloprotease *(FtsH4/11) & original description: none


Gene families : OG0001340 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001340_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g29548

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00107p00109770 FTSH11,... Protein degradation.peptidase families.metallopeptidase... 0.02 OrthoFinder output from all 47 species
AT5G53170 FTSH11 FTSH protease 11 0.02 OrthoFinder output from all 47 species
Adi_g025495 FTSH11 ATP-dependent metalloprotease *(FtsH4/11) & original... 0.02 OrthoFinder output from all 47 species
Ala_g08447 FTSH11 ATP-dependent metalloprotease *(FtsH4/11) & original... 0.03 OrthoFinder output from all 47 species
Aop_g08855 ftsh4 ATP-dependent metalloprotease *(FtsH4/11) & original... 0.02 OrthoFinder output from all 47 species
Azfi_s0064.g035605 FTSH11 ATP-dependent metalloprotease *(FtsH4/11) & original... 0.03 OrthoFinder output from all 47 species
Cba_g25307 FTSH11 ATP-dependent metalloprotease *(FtsH4/11) & original... 0.03 OrthoFinder output from all 47 species
Cba_g72999 ftsh4 ATP-dependent metalloprotease *(FtsH4/11) & original... 0.03 OrthoFinder output from all 47 species
Ceric.12G016700.1 ftsh4, Ceric.12G016700 ATP-dependent metalloprotease *(FtsH4/11) & original... 0.03 OrthoFinder output from all 47 species
Ceric.25G029600.1 ftsh4, Ceric.25G029600 ATP-dependent metalloprotease *(FtsH4/11) & original... 0.04 OrthoFinder output from all 47 species
Ceric.36G065900.1 FTSH11, Ceric.36G065900 ATP-dependent metalloprotease *(FtsH4/11) & original... 0.03 OrthoFinder output from all 47 species
Dcu_g06411 ftsh4 ATP-dependent metalloprotease *(FtsH4/11) & original... 0.02 OrthoFinder output from all 47 species
Gb_20184 FTSH11 component FtsH4|11 of FtsH mitochondrial protease complexes 0.03 OrthoFinder output from all 47 species
LOC_Os01g43150.1 FTSH11, LOC_Os01g43150 component FtsH4|11 of FtsH mitochondrial protease complexes 0.03 OrthoFinder output from all 47 species
Len_g03868 ftsh4 ATP-dependent metalloprotease *(FtsH4/11) & original... 0.02 OrthoFinder output from all 47 species
Lfl_g02301 FTSH11 ATP-dependent metalloprotease *(FtsH4/11) & original... 0.02 OrthoFinder output from all 47 species
Nbi_g02399 FTSH11 ATP-dependent metalloprotease *(FtsH4/11) & original... 0.03 OrthoFinder output from all 47 species
Ore_g40941 FTSH11 ATP-dependent metalloprotease *(FtsH4/11) & original... 0.02 OrthoFinder output from all 47 species
Ore_g40942 FTSH11 ATP-dependent metalloprotease *(FtsH4/11) & original... 0.02 OrthoFinder output from all 47 species
Pir_g02841 FTSH11 ATP-dependent metalloprotease *(FtsH4/11) & original... 0.05 OrthoFinder output from all 47 species
Pnu_g11457 FTSH11 ATP-dependent metalloprotease *(FtsH4/11) & original... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0128.g021883 FTSH11 not classified & original description: CDS=219-2795 0.03 OrthoFinder output from all 47 species
Solyc03g007330.3.1 FTSH11, Solyc03g007330 component FtsH4|11 of FtsH mitochondrial protease complexes 0.03 OrthoFinder output from all 47 species
Solyc08g063050.3.1 ftsh4, Solyc08g063050 component FtsH4|11 of FtsH mitochondrial protease complexes 0.02 OrthoFinder output from all 47 species
Spa_g12456 FTSH11 ATP-dependent metalloprotease *(FtsH4/11) & original... 0.02 OrthoFinder output from all 47 species
Tin_g11112 ftsh4 ATP-dependent metalloprotease *(FtsH4/11) & original... 0.02 OrthoFinder output from all 47 species
Tin_g14314 FTSH11 ATP-dependent metalloprotease *(FtsH4/11) & original... 0.02 OrthoFinder output from all 47 species
Zm00001e020499_P001 ftsh4, Zm00001e020499 component FtsH4|11 of FtsH mitochondrial protease complexes 0.02 OrthoFinder output from all 47 species
Zm00001e027886_P001 FTSH11, Zm00001e027886 component FtsH4|11 of FtsH mitochondrial protease complexes 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0016887 ATP hydrolysis activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004425 indole-3-glycerol-phosphate synthase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
MF GO:0004559 alpha-mannosidase activity IEP HCCA
MF GO:0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008408 3'-5' exonuclease activity IEP HCCA
MF GO:0010277 chlorophyllide a oxygenase [overall] activity IEP HCCA
MF GO:0015923 mannosidase activity IEP HCCA
MF GO:0015924 mannosyl-oligosaccharide mannosidase activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP HCCA
MF GO:0016703 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases) IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016831 carboxy-lyase activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
MF GO:0030151 molybdenum ion binding IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0035556 intracellular signal transduction IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR000642 Peptidase_M41 761 939
IPR003959 ATPase_AAA_core 551 678
IPR041569 AAA_lid_3 702 745
No external refs found!