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  5. Sam_g30412

Sam_g30412


Description : SBP-type transcription factor & original description: none


Gene families : OG0000121 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000121_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g30412
Cluster HCCA: Cluster_181

Target Alias Description ECC score Gene Family Method Actions
Adi_g015714 SPL2 SBP-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g085801 SPL7, ATSPL7 SBP-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g086370 No alias SBP-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Als_g57939 SPL7, ATSPL7 regulatory protein *(SPL7) of copper homeostasis &... 0.02 OrthoFinder output from all 47 species
Aop_g31126 SPL7, ATSPL7 SBP-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g36590 SPL7, ATSPL7 SBP-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Cre01.g012200 SPL3 RNA biosynthesis.transcriptional activation.SBP... 0.01 OrthoFinder output from all 47 species
Cre02.g112750 No alias RNA biosynthesis.transcriptional activation.SBP... 0.01 OrthoFinder output from all 47 species
Cre07.g325738 SPL7, ATSPL7 RNA biosynthesis.transcriptional activation.SBP... 0.01 OrthoFinder output from all 47 species
Cre07.g345050 SPL3 RNA biosynthesis.transcriptional activation.SBP... 0.03 OrthoFinder output from all 47 species
Dde_g21516 SPL7, ATSPL7 SBP-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g21682 SPL7, ATSPL7 regulatory protein *(SPL7) of copper homeostasis &... 0.02 OrthoFinder output from all 47 species
Ehy_g03947 AtSPL9, SPL9 SBP-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g03958 SPL7, ATSPL7 SBP-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g23300 SPL12 SBP-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g09441 SPL7, ATSPL7 SBP-type transcription factor & original description: none 0.07 OrthoFinder output from all 47 species
MA_10432997g0010 SPL7, ATSPL7 transcription factor (SBP) 0.02 OrthoFinder output from all 47 species
Msp_g47637 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g33008 SPL2 SBP-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g04263 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
MF GO:0008408 3'-5' exonuclease activity IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
InterPro domains Description Start Stop
IPR004333 SBP_dom 186 259
No external refs found!