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  5. Sam_g34681

Sam_g34681


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g34681

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00217860 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g13650... 0.02 OrthoFinder output from all 47 species
AMTR_s00071p00184210 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g13650... 0.02 OrthoFinder output from all 47 species
AT4G21065 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g057899 OSB3 cofactor of plastid-encoded RNA polymerase *(TAC9) &... 0.02 OrthoFinder output from all 47 species
Adi_g069101 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g02043 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g14520 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g17267 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g20749 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g25745 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g30600 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g32791 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g35870 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g04452 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g54869 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g07895 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g13601 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g13877 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g36684 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g37340 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g40045 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g42240 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g03744 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g03749 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g05192 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g05345 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g13134 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g16516 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g16820 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g23995 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g26042 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g29708 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g63229 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0003.g007695 No alias not classified & original description: CDS=1-2262 0.03 OrthoFinder output from all 47 species
Azfi_s0015.g013978 CRR22 not classified & original description: CDS=1-2136 0.02 OrthoFinder output from all 47 species
Azfi_s0028.g023878 No alias not classified & original description: CDS=1-2883 0.03 OrthoFinder output from all 47 species
Azfi_s0068.g036346 EMB2261 not classified & original description: CDS=1-888 0.02 OrthoFinder output from all 47 species
Azfi_s0134.g049386 No alias not classified & original description: CDS=1-2409 0.03 OrthoFinder output from all 47 species
Azfi_s0191.g056992 No alias not classified & original description: CDS=1-2262 0.04 OrthoFinder output from all 47 species
Azfi_s0210.g058082 No alias not classified & original description: CDS=1-2637 0.02 OrthoFinder output from all 47 species
Azfi_s0308.g064002 No alias not classified & original description: CDS=1-2367 0.02 OrthoFinder output from all 47 species
Azfi_s0345.g065836 No alias not classified & original description: CDS=1-3591 0.02 OrthoFinder output from all 47 species
Azfi_s0768.g086029 No alias not classified & original description: CDS=1-2331 0.03 OrthoFinder output from all 47 species
Cba_g06836 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g35114 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.01G053600.1 Ceric.01G053600 not classified & original description: pacid=50592089... 0.03 OrthoFinder output from all 47 species
Ceric.02G042700.1 Ceric.02G042700 not classified & original description: pacid=50584264... 0.03 OrthoFinder output from all 47 species
Ceric.02G054700.1 Ceric.02G054700 not classified & original description: pacid=50584211... 0.03 OrthoFinder output from all 47 species
Ceric.04G040300.1 CRR22, Ceric.04G040300 not classified & original description: pacid=50630674... 0.03 OrthoFinder output from all 47 species
Ceric.06G009700.1 VAC1, ECB2,... not classified & original description: pacid=50619980... 0.02 OrthoFinder output from all 47 species
Ceric.07G000400.1 Ceric.07G000400 not classified & original description: pacid=50627195... 0.03 OrthoFinder output from all 47 species
Ceric.07G024400.1 Ceric.07G024400 not classified & original description: pacid=50626298... 0.03 OrthoFinder output from all 47 species
Ceric.1Z081600.1 CRR22, Ceric.1Z081600 not classified & original description: pacid=50582216... 0.03 OrthoFinder output from all 47 species
Ceric.1Z148300.1 Ceric.1Z148300 not classified & original description: pacid=50637132... 0.02 OrthoFinder output from all 47 species
Ceric.22G079200.1 OTP84, Ceric.22G079200 not classified & original description: pacid=50615391... 0.03 OrthoFinder output from all 47 species
Ceric.23G083100.1 Ceric.23G083100 ssDNA-binding protein *(OSB) & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.24G026700.1 Ceric.24G026700 not classified & original description: pacid=50628649... 0.04 OrthoFinder output from all 47 species
Ceric.30G007900.1 Ceric.30G007900 not classified & original description: pacid=50608292... 0.03 OrthoFinder output from all 47 species
Ceric.33G057300.1 Ceric.33G057300 not classified & original description: pacid=50607177... 0.02 OrthoFinder output from all 47 species
Cre12.g483700 OSB4 Cell cycle.organelle machineries.DNA... 0.03 OrthoFinder output from all 47 species
Dac_g02738 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g04715 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g05085 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g08335 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g12450 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g14692 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g14700 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g18714 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g21258 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g21876 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g27947 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g31947 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g42743 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g43262 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g45442 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g45949 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g05782 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g06479 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g16815 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g17093 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g37399 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g40969 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g04315 CRR22 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g08437 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g15900 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g26477 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g46554 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os07g39090.1 LOC_Os07g39090 Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
Len_g05415 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g18031 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g06666 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g07708 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_39595g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
MA_656915g0010 CRR22 Pentatricopeptide repeat-containing protein DOT4,... 0.02 OrthoFinder output from all 47 species
Msp_g01336 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g03915 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g04357 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g11258 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g14470 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g15850 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g17695 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g24337 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g28772 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g31949 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g34245 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g44401 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g45004 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g02383 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g06751 OTP86 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g06814 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g07843 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g10381 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g11918 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g13685 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g13754 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g15557 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g16032 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g18968 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g20422 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g20494 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g20606 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g21521 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g24894 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g25474 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g25502 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g27739 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g27832 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g28116 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g30381 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g30847 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g31889 MEF21 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g31921 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g34920 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g38627 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g01804 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g14351 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g18088 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g23954 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g38356 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g11374 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g12988 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g57360 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g63661 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g03628 REME1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g04681 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g06744 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g06858 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g07557 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g08487 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g08859 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g15313 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g22205 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g22251 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g39076 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g43570 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g44278 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g49219 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g49399 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g53366 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g53548 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g53593 DOT4 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g60357 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g63671 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002051 REME1 not classified & original description: CDS=1-1467 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0026.g009533 CRR22 not classified & original description: CDS=248-2017 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0056.g014554 No alias not classified & original description: CDS=1-3528 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0174.g024503 No alias not classified & original description: CDS=1-2574 0.02 OrthoFinder output from all 47 species
Sam_g07135 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g07203 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g12346 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g17721 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g21461 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g24177 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g26535 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g27517 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g37131 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo10066 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 OrthoFinder output from all 47 species
Solyc03g051780.3.1 Solyc03g051780 Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
Spa_g08565 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g10971 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g13637 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g15467 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g18774 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g21942 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g49369 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g02798 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g04707 OTP84 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g05499 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g05669 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g10295 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g13479 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g14571 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g17626 DOT4 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g21831 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g22744 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g26455 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g26743 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g26904 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g27976 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g29962 OTP86 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g30445 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g31206 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g31490 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g34283 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g35104 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g40280 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e027978_P001 MEF1, Zm00001e027978 RNA editing factor (MEF1) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 124 170
IPR002885 Pentatricopeptide_repeat 225 273
IPR002885 Pentatricopeptide_repeat 327 374
IPR002885 Pentatricopeptide_repeat 430 468
IPR002885 Pentatricopeptide_repeat 21 69
IPR002885 Pentatricopeptide_repeat 404 426
IPR002885 Pentatricopeptide_repeat 200 223
No external refs found!