Sam_g35204


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g35204

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00011p00266560 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.02 OrthoFinder output from all 47 species
Adi_g004502 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g005730 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g014360 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g018203 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g033331 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g110647 MEF21 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g34933 REME1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g25316 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g25949 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g36532 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g38943 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g03812 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g05074 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g07129 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g07213 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g25950 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g30091 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g30566 REME1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g30597 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g04207 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene24113.t1 VAC1, ECB2,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0008.g011650 VAC1, ECB2, ATECB2 not classified & original description: CDS=1-2676 0.03 OrthoFinder output from all 47 species
Azfi_s0012.g012913 No alias not classified & original description: CDS=1-2943 0.01 OrthoFinder output from all 47 species
Azfi_s0024.g020340 No alias not classified & original description: CDS=1-2319 0.01 OrthoFinder output from all 47 species
Azfi_s0126.g048645 No alias not classified & original description: CDS=1-2262 0.02 OrthoFinder output from all 47 species
Cba_g06916 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g22313 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g34639 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g49960 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g67906 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.04G112800.1 Ceric.04G112800 not classified & original description: pacid=50632583... 0.02 OrthoFinder output from all 47 species
Ceric.06G022800.1 Ceric.06G022800 not classified & original description: pacid=50620328... 0.03 OrthoFinder output from all 47 species
Ceric.09G087400.1 Ceric.09G087400 not classified & original description: pacid=50586781... 0.02 OrthoFinder output from all 47 species
Ceric.14G063100.1 Ceric.14G063100 not classified & original description: pacid=50634149... 0.02 OrthoFinder output from all 47 species
Ceric.31G020200.1 Ceric.31G020200 not classified & original description: pacid=50574865... 0.02 OrthoFinder output from all 47 species
Dcu_g06799 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g08223 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g12070 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g17094 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g40967 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g03965 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g04006 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g05943 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g08346 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g22008 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g28699 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g38000 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g38178 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g40992 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g42122 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g18216 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g19229 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01012201001 OTP82 Pentatricopeptide repeat-containing protein At1g08070,... 0.02 OrthoFinder output from all 47 species
Gb_00776 No alias Pentatricopeptide repeat-containing protein At5g50390,... 0.02 OrthoFinder output from all 47 species
Gb_38938 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.02 OrthoFinder output from all 47 species
LOC_Os09g07780.1 OTP84, LOC_Os09g07780 Pentatricopeptide repeat-containing protein At3g57430,... 0.01 OrthoFinder output from all 47 species
Len_g04237 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g07224 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g12492 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g15309 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g34160 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g53456 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_10338179g0010 OTP84 Pentatricopeptide repeat-containing protein At3g57430,... 0.01 OrthoFinder output from all 47 species
MA_10432704g0020 CRR22 Pentatricopeptide repeat-containing protein DOT4,... 0.01 OrthoFinder output from all 47 species
Msp_g09671 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g25014 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g28522 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g28538 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g44115 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g46039 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g07086 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g15428 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g20199 OTP86 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g20274 OTP86 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g23636 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g25822 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g26245 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Nbi_g27966 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g26843 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g22239 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g30840 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0006.g002988 No alias not classified & original description: CDS=1-2412 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0006.g002995 DOT4 not classified & original description: CDS=1-2349 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0013.g005803 No alias not classified & original description: CDS=32-2446 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0014.g006214 No alias not classified & original description: CDS=115-2940 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0026.g009486 No alias not classified & original description: CDS=1-3465 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0051.g013942 No alias not classified & original description: CDS=1-3669 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0095.g019259 No alias not classified & original description: CDS=1-1518 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0129.g021987 No alias not classified & original description: CDS=1-1590 0.03 OrthoFinder output from all 47 species
Sam_g11203 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g11617 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g29286 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g39472 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g45851 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc10g005090.3.1 Solyc10g005090 Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
Spa_g15737 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g25320 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g08446 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Tin_g17876 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g19925 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g23272 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g38826 REME1 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Tin_g45439 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e015440_P001 CRR22, Zm00001e015440 Pentatricopeptide repeat-containing protein At3g57430,... 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP HCCA
MF GO:0004045 aminoacyl-tRNA hydrolase activity IEP HCCA
MF GO:0008897 holo-[acyl-carrier-protein] synthase activity IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
MF GO:0016780 phosphotransferase activity, for other substituted phosphate groups IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
MF GO:0052689 carboxylic ester hydrolase activity IEP HCCA
MF GO:0071949 FAD binding IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 150 170
IPR002885 Pentatricopeptide_repeat 279 309
IPR002885 Pentatricopeptide_repeat 50 69
IPR002885 Pentatricopeptide_repeat 251 278
IPR002885 Pentatricopeptide_repeat 377 424
IPR002885 Pentatricopeptide_repeat 75 122
No external refs found!