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  5. Sam_g35960

Sam_g35960


Description : not classified & original description: none


Gene families : OG0000842 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000842_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g35960

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00021p00253210 HVA22F,... HVA22-like protein f OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Aop_g27313 HVA22F not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.08G072400.1 HVA22F, Ceric.08G072400 not classified & original description: pacid=50637758... 0.03 OrthoFinder output from all 47 species
Dac_g12350 ATHVA22A, HVA22A not classified & original description: none 0.06 OrthoFinder output from all 47 species
GSVIVT01008576001 HVA22E, ATHVA22E HVA22-like protein e OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Gb_05305 ATHVA22A, HVA22A HVA22-like protein a OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Gb_24347 HVA22F HVA22-like protein f OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
LOC_Os01g52780.1 HVA22F, LOC_Os01g52780 HVA22-like protein f OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Lfl_g01618 HVA22F not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_62010g0010 HVA22F HVA22-like protein f OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Mp3g15420.1 HVA22E, ATHVA22E HVA22-like protein f OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Nbi_g10087 HVA22F not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g04615 HVA22F not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g53161 HVA22E, ATHVA22E not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g50646 HVA22F not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc03g097420.3.1 HVA22E,... HVA22-like protein d OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Solyc04g014420.4.1 HVA22E,... Protein HVA22 OS=Hordeum vulgare (sp|q07764|hva22_horvu : 117.0) 0.02 OrthoFinder output from all 47 species
Zm00001e009930_P001 HVA22D,... Protein HVA22 OS=Hordeum vulgare (sp|q07764|hva22_horvu : 161.0) 0.02 OrthoFinder output from all 47 species
Zm00001e011109_P001 HVA22E,... Protein HVA22 OS=Hordeum vulgare (sp|q07764|hva22_horvu : 168.0) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
MF GO:0004568 chitinase activity IEP HCCA
BP GO:0006022 aminoglycan metabolic process IEP HCCA
BP GO:0006026 aminoglycan catabolic process IEP HCCA
BP GO:0006030 chitin metabolic process IEP HCCA
BP GO:0006032 chitin catabolic process IEP HCCA
BP GO:0006040 amino sugar metabolic process IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
BP GO:0016998 cell wall macromolecule catabolic process IEP HCCA
BP GO:0044036 cell wall macromolecule metabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0046348 amino sugar catabolic process IEP HCCA
BP GO:1901071 glucosamine-containing compound metabolic process IEP HCCA
BP GO:1901072 glucosamine-containing compound catabolic process IEP HCCA
BP GO:1901135 carbohydrate derivative metabolic process IEP HCCA
BP GO:1901136 carbohydrate derivative catabolic process IEP HCCA
BP GO:1901565 organonitrogen compound catabolic process IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR004345 TB2_DP1_HVA22 103 177
No external refs found!