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  5. Sam_g37190

Sam_g37190


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g37190

Target Alias Description ECC score Gene Family Method Actions
AT4G33170 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g015939 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g056053 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g058786 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g080993 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g102645 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g28165 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g42949 PTAC9, OSB2 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g17191 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g23642 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g26450 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g12718 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g08381 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g03491 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g15693 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g16170 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g16810 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g20705 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g28296 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g29893 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene11731.t1 Aspi01Gene11731 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene30517.t1 CRR22, Aspi01Gene30517 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g04064 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g06593 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g07684 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g07750 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g67841 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g68945 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.04G106200.1 Ceric.04G106200 not classified & original description: pacid=50630879... 0.02 OrthoFinder output from all 47 species
Dcu_g08885 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g11021 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g36067 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g16425 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g19431 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os01g66160.1 REME1, LOC_Os01g66160 Pentatricopeptide repeat-containing protein At2g03880,... 0.02 OrthoFinder output from all 47 species
LOC_Os03g56850.1 LOC_Os03g56850 Pentatricopeptide repeat-containing protein At4g21300... 0.02 OrthoFinder output from all 47 species
LOC_Os12g30620.1 LOC_Os12g30620 Pentatricopeptide repeat-containing protein At3g29230... 0.02 OrthoFinder output from all 47 species
Len_g22113 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g44785 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g05438 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g06639 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g07380 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g12546 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_10317671g0010 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.02 OrthoFinder output from all 47 species
Msp_g19273 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g35189 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g06724 OTP86 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g30106 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g40774 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g42363 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g47008 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g61472 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g16066 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g30296 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g11120 REME1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0029.g010124 No alias ssDNA-binding protein *(OSB) & original description: CDS=208-2547 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0125.g021689 No alias S-adenosyl methionine transporter *(GOSAMT) & original... 0.02 OrthoFinder output from all 47 species
Sam_g08652 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g50518 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo127736 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
Smo16621 No alias Pentatricopeptide repeat-containing protein At1g50270... 0.02 OrthoFinder output from all 47 species
Smo71935 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.02 OrthoFinder output from all 47 species
Spa_g15468 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g22195 OTP82 not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016791 phosphatase activity IEP HCCA
MF GO:0032182 ubiquitin-like protein binding IEP HCCA
MF GO:0032266 phosphatidylinositol-3-phosphate binding IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
MF GO:0035091 phosphatidylinositol binding IEP HCCA
MF GO:0042578 phosphoric ester hydrolase activity IEP HCCA
MF GO:0043130 ubiquitin binding IEP HCCA
MF GO:1901981 phosphatidylinositol phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 117 166
IPR002885 Pentatricopeptide_repeat 825 872
IPR002885 Pentatricopeptide_repeat 521 564
IPR002885 Pentatricopeptide_repeat 622 669
IPR002885 Pentatricopeptide_repeat 724 770
IPR002885 Pentatricopeptide_repeat 421 467
IPR002885 Pentatricopeptide_repeat 318 368
IPR002885 Pentatricopeptide_repeat 597 620
IPR002885 Pentatricopeptide_repeat 899 922
IPR002885 Pentatricopeptide_repeat 698 723
IPR002885 Pentatricopeptide_repeat 193 216
IPR002885 Pentatricopeptide_repeat 221 249
No external refs found!