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  5. Sam_g37684

Sam_g37684


Description : ER-tubule curvature-inducing protein *(Reticulon) & original description: none


Gene families : OG0000272 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000272_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g37684

Target Alias Description ECC score Gene Family Method Actions
AT3G18260 No alias Reticulon family protein 0.02 OrthoFinder output from all 47 species
AT4G01230 No alias Reticulon family protein 0.02 OrthoFinder output from all 47 species
Aev_g25949 No alias ER-tubule curvature-inducing protein *(Reticulon) &... 0.05 OrthoFinder output from all 47 species
Ala_g24666 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g24680 No alias ER-tubule curvature-inducing protein *(Reticulon) &... 0.19 OrthoFinder output from all 47 species
Als_g40043 RTNLB2, BTI2 ER-tubule curvature-inducing protein *(Reticulon) &... 0.07 OrthoFinder output from all 47 species
Als_g50102 BTI1, RTNLB1 ER-tubule curvature-inducing protein *(Reticulon) &... 0.18 OrthoFinder output from all 47 species
Aspi01Gene63604.t1 BTI1, RTNLB1,... ER-tubule curvature-inducing protein *(Reticulon) &... 0.05 OrthoFinder output from all 47 species
Ceric.19G012300.1 Ceric.19G012300 ER-tubule curvature-inducing protein *(Reticulon) &... 0.06 OrthoFinder output from all 47 species
Ehy_g03409 RTNLB2, BTI2 ER-tubule curvature-inducing protein *(Reticulon) &... 0.02 OrthoFinder output from all 47 species
Gb_33890 No alias ER-associated protein (Reticulon) 0.02 OrthoFinder output from all 47 species
LOC_Os01g04640.1 LOC_Os01g04640 ER-associated protein (Reticulon) 0.02 OrthoFinder output from all 47 species
LOC_Os04g57420.1 LOC_Os04g57420 ER-associated protein (Reticulon) 0.03 OrthoFinder output from all 47 species
LOC_Os05g24770.1 BTI1, RTNLB1,... ER-associated protein (Reticulon) 0.03 OrthoFinder output from all 47 species
LOC_Os05g47690.1 LOC_Os05g47690 ER-associated protein (Reticulon) 0.01 OrthoFinder output from all 47 species
Len_g56590 No alias ER-tubule curvature-inducing protein *(Reticulon) &... 0.16 OrthoFinder output from all 47 species
Lfl_g22278 RTNLB2, BTI2 ER-tubule curvature-inducing protein *(Reticulon) &... 0.02 OrthoFinder output from all 47 species
Lfl_g27211 RTNLB2, BTI2 ER-tubule curvature-inducing protein *(Reticulon) &... 0.02 OrthoFinder output from all 47 species
Msp_g38145 No alias ER-tubule curvature-inducing protein *(Reticulon) &... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0046.g013357 RTNLB2, BTI2 ER-tubule curvature-inducing protein *(Reticulon) &... 0.02 OrthoFinder output from all 47 species
Smo96839 No alias Reticulon-like protein B5 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Solyc06g082740.3.1 Solyc06g082740 ER-associated protein (Reticulon) 0.03 OrthoFinder output from all 47 species
Spa_g37965 No alias ER-tubule curvature-inducing protein *(Reticulon) &... 0.03 OrthoFinder output from all 47 species
Spa_g51559 No alias ER-tubule curvature-inducing protein *(Reticulon) &... 0.02 OrthoFinder output from all 47 species
Spa_g56482 RTNLB3 ER-tubule curvature-inducing protein *(Reticulon) &... 0.02 OrthoFinder output from all 47 species
Zm00001e032328_P001 Zm00001e032328 ER-associated protein (Reticulon) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
BP GO:0032392 DNA geometric change IEP HCCA
BP GO:0032508 DNA duplex unwinding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR003388 Reticulon 79 189
No external refs found!