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  5. Sam_g37859

Sam_g37859


Description : component *(HAF/TAF1) of SAGA transcription co-activator complex & original description: none


Gene families : OG0003088 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003088_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g37859
Cluster HCCA: Cluster_141

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00078p00132750 HAF01, HAC13,... Protein modification.phosphorylation.atypical kinase... 0.12 OrthoFinder output from all 47 species
AT1G32750 HAF01, HAC13,... HAC13 protein (HAC13) 0.11 OrthoFinder output from all 47 species
AT3G19040 TAF1B, TAF1, HAF2 histone acetyltransferase of the TAFII250 family 2 0.02 OrthoFinder output from all 47 species
Adi_g086241 HAF01, HAC13,... component *(HAF/TAF1) of SAGA transcription co-activator... 0.03 OrthoFinder output from all 47 species
Aev_g16440 HAF01, HAC13,... component *(HAF/TAF1) of SAGA transcription co-activator... 0.03 OrthoFinder output from all 47 species
Ala_g25268 HAF01, HAC13,... component *(HAF/TAF1) of SAGA transcription co-activator... 0.07 OrthoFinder output from all 47 species
Als_g23531 HAF01, HAC13,... component *(HAF/TAF1) of SAGA transcription co-activator... 0.03 OrthoFinder output from all 47 species
Als_g30416 HAF01, HAC13,... component *(HAF/TAF1) of SAGA transcription co-activator... 0.04 OrthoFinder output from all 47 species
Aop_g13570 HAF01, HAC13,... component *(HAF/TAF1) of SAGA transcription co-activator... 0.04 OrthoFinder output from all 47 species
Aspi01Gene49967.t1 HAF01, HAC13,... component *(HAF/TAF1) of SAGA transcription co-activator... 0.04 OrthoFinder output from all 47 species
Aspi01Gene49969.t1 TAF1B, TAF1,... component *(HAF/TAF1) of SAGA transcription co-activator... 0.04 OrthoFinder output from all 47 species
Aspi01Gene49971.t1 HAF01, HAC13,... component *(HAF/TAF1) of SAGA transcription co-activator... 0.03 OrthoFinder output from all 47 species
Aspi01Gene63822.t1 HAF01, HAC13,... component *(HAF/TAF1) of SAGA transcription co-activator... 0.02 OrthoFinder output from all 47 species
Cba_g11487 HAF01, HAC13,... component *(HAF/TAF1) of SAGA transcription co-activator... 0.03 OrthoFinder output from all 47 species
Ceric.20G008000.1 HAF01, HAC13,... component *(HAF/TAF1) of SAGA transcription co-activator... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020903.20 HAF01, HAC13,... RNA biosynthesis.RNA polymerase II-dependent... 0.03 OrthoFinder output from all 47 species
Cre10.g425501 HAF01, HAC13,... Transcription initiation factor TFIID subunit 1 OS=Oryza... 0.02 OrthoFinder output from all 47 species
Dac_g06992 HAF01, HAC13,... component *(HAF/TAF1) of SAGA transcription co-activator... 0.05 OrthoFinder output from all 47 species
Dcu_g03217 HAF01, HAC13,... component *(HAF/TAF1) of SAGA transcription co-activator... 0.09 OrthoFinder output from all 47 species
GSVIVT01020528001 HAF01, HAC13,... Protein modification.phosphorylation.atypical kinase... 0.09 OrthoFinder output from all 47 species
LOC_Os06g43790.1 HAF01, HAC13,... component HAF/TAF1 of SAGA transcription co-activator... 0.05 OrthoFinder output from all 47 species
Lfl_g06767 HAF01, HAC13,... component *(HAF/TAF1) of SAGA transcription co-activator... 0.06 OrthoFinder output from all 47 species
Mp5g22790.1 HAF01, HAC13,... component HAF/TAF1 of SAGA transcription co-activator... 0.03 OrthoFinder output from all 47 species
Msp_g14379 HAF01, HAC13,... component *(HAF/TAF1) of SAGA transcription co-activator... 0.07 OrthoFinder output from all 47 species
Pir_g10966 HAF01, HAC13,... component *(HAF/TAF1) of SAGA transcription co-activator... 0.04 OrthoFinder output from all 47 species
Ppi_g32049 HAF01, HAC13,... component *(HAF/TAF1) of SAGA transcription co-activator... 0.04 OrthoFinder output from all 47 species
Smo409957 HAF01, HAC13,... Protein modification.phosphorylation.atypical kinase... 0.05 OrthoFinder output from all 47 species
Solyc07g006820.4.1 HAF01, HAC13,... component HAF/TAF1 of SAGA transcription co-activator... 0.1 OrthoFinder output from all 47 species
Spa_g55054 HAF01, HAC13,... component *(HAF/TAF1) of SAGA transcription co-activator... 0.02 OrthoFinder output from all 47 species
Zm00001e037464_P001 HAF01, HAC13,... component HAF/TAF1 of SAGA transcription co-activator... 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
CC GO:0005886 plasma membrane IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0009306 protein secretion IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0032940 secretion by cell IEP HCCA
BP GO:0035592 establishment of protein localization to extracellular region IEP HCCA
BP GO:0046903 secretion IEP HCCA
MF GO:0047952 glycerol-3-phosphate dehydrogenase [NAD(P)+] activity IEP HCCA
BP GO:0071692 protein localization to extracellular region IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0140352 export from cell IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR009067 TAF_II_230-bd 15 54
IPR001487 Bromodomain 1952 2026
IPR000626 Ubiquitin-like_dom 678 747
IPR022591 TAF1_HAT_dom 591 1163
No external refs found!