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  5. Sam_g37954

Sam_g37954


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g37954

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00217860 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g13650... 0.01 OrthoFinder output from all 47 species
Adi_g012547 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g018129 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g033266 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g034292 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g058786 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g087380 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g099287 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g110083 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g116035 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g23493 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g03812 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g03878 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g04930 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g12718 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Als_g14743 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g18398 OTP86 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g18621 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g09064 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g21660 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g22823 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g28228 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g29513 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g37586 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g09731 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g16806 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0005.g009353 No alias not classified & original description: CDS=1-2883 0.03 OrthoFinder output from all 47 species
Azfi_s0028.g023799 No alias not classified & original description: CDS=1-1911 0.02 OrthoFinder output from all 47 species
Azfi_s0130.g049076 No alias not classified & original description: CDS=1-1890 0.03 OrthoFinder output from all 47 species
Azfi_s0251.g060294 No alias not classified & original description: CDS=1-879 0.02 OrthoFinder output from all 47 species
Azfi_s1087.g097170 CRR2 not classified & original description: CDS=372-1700 0.02 OrthoFinder output from all 47 species
Cba_g66293 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g67649 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.36G058400.1 Ceric.36G058400 not classified & original description: pacid=50568396... 0.02 OrthoFinder output from all 47 species
Dac_g18563 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g33204 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g42998 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g44991 LOI1, MEF11 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g08312 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g08653 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g13254 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g25892 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g35692 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g05942 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g23994 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g26771 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g30703 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g49830 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g15996 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g25136 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os02g44480.1 LOC_Os02g44480 Pentatricopeptide repeat-containing protein At5g39350... 0.01 OrthoFinder output from all 47 species
LOC_Os03g60200.1 LOC_Os03g60200 Pentatricopeptide repeat-containing protein At2g41080... 0.02 OrthoFinder output from all 47 species
Len_g02917 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g04352 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g54328 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_5858185g0010 No alias Pentatricopeptide repeat-containing protein At4g30700... 0.02 OrthoFinder output from all 47 species
Msp_g23170 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g24622 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g35200 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g36833 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g27744 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g04708 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g30175 PTAC9, OSB2 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g32143 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g39910 DOT4 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g03426 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g14836 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g29651 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g57080 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g57989 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g06218 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g22825 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g22860 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g16308 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g18659 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000724 No alias not classified & original description: CDS=90-728 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0033.g011073 No alias not classified & original description: CDS=173-2326 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0089.g018668 No alias ssDNA-binding protein *(OSB) & original description:... 0.02 OrthoFinder output from all 47 species
Sam_g26415 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g26608 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g50768 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo99756 No alias Pentatricopeptide repeat-containing protein At2g39620... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP HCCA
CC GO:0005743 mitochondrial inner membrane IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006629 lipid metabolic process IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
CC GO:0019866 organelle inner membrane IEP HCCA
MF GO:0020037 heme binding IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
CC GO:0031966 mitochondrial membrane IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
MF GO:0046906 tetrapyrrole binding IEP HCCA
CC GO:0061617 MICOS complex IEP HCCA
CC GO:0098798 mitochondrial protein-containing complex IEP HCCA
CC GO:0098800 inner mitochondrial membrane protein complex IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 96 141
IPR002885 Pentatricopeptide_repeat 194 240
IPR002885 Pentatricopeptide_repeat 496 543
IPR002885 Pentatricopeptide_repeat 397 442
IPR002885 Pentatricopeptide_repeat 295 341
IPR002885 Pentatricopeptide_repeat 601 629
IPR002885 Pentatricopeptide_repeat 572 597
No external refs found!