Sam_g38475


Description : TCX/CPP-type transcription factor & original description: none


Gene families : OG0001700 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001700_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g38475

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00271710 TSO1, ATTSO1,... RNA biosynthesis.transcriptional activation.CPP1-like... 0.02 OrthoFinder output from all 47 species
AT4G14770 TCX2, ATTCX2 TESMIN/TSO1-like CXC 2 0.02 OrthoFinder output from all 47 species
Adi_g089273 TCX2, ATTCX2 TCX/CPP-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g089274 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g14241 TSO1, ATTSO1 TCX/CPP-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g47414 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g07596 SOL1 TCX/CPP-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01018021001 TCX2, ATTCX2 RNA biosynthesis.transcriptional activation.CPP1-like... 0.02 OrthoFinder output from all 47 species
LOC_Os03g43730.1 TCX2, ATTCX2,... CPP1-like transcription factor 0.02 OrthoFinder output from all 47 species
Lfl_g16959 TCX2, ATTCX2 TCX/CPP-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g06810 SOL1 TCX/CPP-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g17407 SOL1 TCX/CPP-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0019.g007665 TCX2, ATTCX2 TCX/CPP-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Spa_g29190 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g50353 SOL1 TCX/CPP-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g10278 SOL1 TCX/CPP-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
MF GO:0008081 phosphoric diester hydrolase activity IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008194 UDP-glycosyltransferase activity IEP HCCA
MF GO:0008373 sialyltransferase activity IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016757 glycosyltransferase activity IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
MF GO:0016872 intramolecular lyase activity IEP HCCA
MF GO:0042578 phosphoric ester hydrolase activity IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR005172 CRC 555 590
IPR005172 CRC 641 675
No external refs found!