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  5. Sam_g38611

Sam_g38611


Description : AS2/LOB-type transcription factor & original description: none


Gene families : OG0000114 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000114_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g38611
Cluster HCCA: Cluster_156

Target Alias Description ECC score Gene Family Method Actions
AT2G45410 LBD19 LOB domain-containing protein 19 0.02 OrthoFinder output from all 47 species
AT3G13850 LBD22 LOB domain-containing protein 22 0.02 OrthoFinder output from all 47 species
AT5G63090 LOB Lateral organ boundaries (LOB) domain family protein 0.03 OrthoFinder output from all 47 species
Aob_g13722 LOB AS2/LOB-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene43917.t1 LBD15, ASL11,... AS2/LOB-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene45805.t1 AS2, Aspi01Gene45805 AS2/LOB-type transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
Azfi_s0076.g037915 LBD20 AS2/LOB-type transcription factor & original... 0.04 OrthoFinder output from all 47 species
Gb_20398 LBD15, ASL11 transcription factor (AS2/LOB) 0.03 OrthoFinder output from all 47 species
LOC_Os01g60960.1 LBD15, ASL11,... transcription factor (AS2/LOB) 0.02 OrthoFinder output from all 47 species
LOC_Os05g07270.1 LBD15, ASL11,... transcription factor (AS2/LOB) 0.02 OrthoFinder output from all 47 species
MA_127139g0010 LBD4 transcription factor (AS2/LOB) 0.02 OrthoFinder output from all 47 species
Nbi_g00674 LBD15, ASL11 AS2/LOB-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pp3c20_9330V3.1 AS2, Pp3c20_9330 LOB domain-containing protein 25 0.01 OrthoFinder output from all 47 species
Sam_g36226 No alias AS2/LOB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Solyc01g091420.2.1 LBD18, Solyc01g091420 transcription factor (AS2/LOB) 0.03 OrthoFinder output from all 47 species
Zm00001e019424_P001 LBD15, ASL11,... transcription factor (AS2/LOB) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004601 peroxidase activity IEP HCCA
MF GO:0004611 phosphoenolpyruvate carboxykinase activity IEP HCCA
MF GO:0004612 phosphoenolpyruvate carboxykinase (ATP) activity IEP HCCA
BP GO:0005996 monosaccharide metabolic process IEP HCCA
BP GO:0006006 glucose metabolic process IEP HCCA
BP GO:0006094 gluconeogenesis IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
MF GO:0016209 antioxidant activity IEP HCCA
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP HCCA
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016831 carboxy-lyase activity IEP HCCA
BP GO:0019318 hexose metabolic process IEP HCCA
BP GO:0019319 hexose biosynthetic process IEP HCCA
BP GO:0044283 small molecule biosynthetic process IEP HCCA
BP GO:0046364 monosaccharide biosynthetic process IEP HCCA
MF GO:0050664 oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor IEP HCCA
InterPro domains Description Start Stop
IPR004883 LOB 14 111
No external refs found!