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  5. Sam_g38762

Sam_g38762


Description : not classified & original description: none


Gene families : OG0002445 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002445_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g38762
Cluster HCCA: Cluster_141

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00066p00089100 SUA,... SUPPRESSOR OF ABI3-5 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
AT3G54230 SUA suppressor of abi3-5 0.05 OrthoFinder output from all 47 species
Adi_g014405 SUA not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g058381 SUA not classified & original description: none 0.08 OrthoFinder output from all 47 species
Adi_g102062 SUA not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g105523 SUA not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g24331 SUA not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g24332 SUA not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g06676 SUA not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g37096 SUA not classified & original description: none 0.06 OrthoFinder output from all 47 species
Als_g20905 SUA not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g22735 SUA not classified & original description: none 0.1 OrthoFinder output from all 47 species
Aob_g03598 SUA not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g19169 SUA not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g04658 SUA not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene21507.t1 SUA, Aspi01Gene21507 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene21508.t1 SUA, Aspi01Gene21508 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene34129.t1 SUA, Aspi01Gene34129 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Azfi_s0129.g048912 SUA not classified & original description: CDS=110-3388 0.02 OrthoFinder output from all 47 species
Cba_g31749 SUA not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.01G030500.1 SUA, Ceric.01G030500 not classified & original description: pacid=50592465... 0.06 OrthoFinder output from all 47 species
Ceric.22G052600.1 SUA, Ceric.22G052600 not classified & original description: pacid=50613886... 0.1 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000769.1 AtABCC2, ABCC2,... ABC transporter C family member 2 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Cre03.g184350 SUA SUPPRESSOR OF ABI3-5 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Dac_g21696 SUA not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g14899 SUA not classified & original description: none 0.07 OrthoFinder output from all 47 species
Dde_g19614 SUA not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g20662 SUA not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01013204001 SUA SUPPRESSOR OF ABI3-5 OS=Arabidopsis thaliana 0.08 OrthoFinder output from all 47 species
Gb_28214 SUA SUPPRESSOR OF ABI3-5 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
LOC_Os02g07070.1 SUA, LOC_Os02g07070 SUPPRESSOR OF ABI3-5 OS=Arabidopsis thaliana... 0.07 OrthoFinder output from all 47 species
Len_g07229 SUA not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g55563 SUA not classified & original description: none 0.07 OrthoFinder output from all 47 species
Lfl_g08592 SUA not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g29782 SUA not classified & original description: none 0.09 OrthoFinder output from all 47 species
MA_10091679g0010 SUA SUPPRESSOR OF ABI3-5 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
MA_188532g0010 SUA SUPPRESSOR OF ABI3-5 OS=Arabidopsis thaliana... 0.1 OrthoFinder output from all 47 species
Mp1g04870.1 SUA SUPPRESSOR OF ABI3-5 OS=Arabidopsis thaliana... 0.06 OrthoFinder output from all 47 species
Nbi_g09118 SUA not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ore_g07127 SUA not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g10790 SUA not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g16565 SUA not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g20001 SUA not classified & original description: none 0.06 OrthoFinder output from all 47 species
Pnu_g20681 SUA not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo407112 SUA SUPPRESSOR OF ABI3-5 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Solyc08g077310.3.1 SUA, Solyc08g077310 SUPPRESSOR OF ABI3-5 OS=Arabidopsis thaliana... 0.09 OrthoFinder output from all 47 species
Spa_g07600 SUA not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e028204_P003 SUA, Zm00001e028204 SUPPRESSOR OF ABI3-5 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Zm00001e033409_P006 SUA, Zm00001e033409 SUPPRESSOR OF ABI3-5 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004402 histone acetyltransferase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006473 protein acetylation IEP HCCA
BP GO:0006475 internal protein amino acid acetylation IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEP HCCA
MF GO:0008080 N-acetyltransferase activity IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
MF GO:0016407 acetyltransferase activity IEP HCCA
MF GO:0016410 N-acyltransferase activity IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016573 histone acetylation IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
BP GO:0018393 internal peptidyl-lysine acetylation IEP HCCA
BP GO:0018394 peptidyl-lysine acetylation IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
MF GO:0031625 ubiquitin protein ligase binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0034212 peptide N-acetyltransferase activity IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043543 protein acylation IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
MF GO:0044389 ubiquitin-like protein ligase binding IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 232 301
No external refs found!