Sam_g38828

Description : component *(uL3c) of large plastid ribosomal-subunit proteome & original description: none

Gene families : OG0005291 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005291_tree

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sam_g38828
Cluster	HCCA: Cluster_16

Target	Alias	Description	ECC score	Gene Family Method
AT2G43030	No alias	Ribosomal protein L3 family protein	0.04	OrthoFinder output from all 47 species
Adi_g022052	No alias	component *(uL3c) of large plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Aob_g03365	No alias	component *(uL3c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Ceric.08G072800.1	Ceric.08G072800	component *(uL3c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Cre48.g761197	No alias	Protein biosynthesis.organelle translation...	0.02	OrthoFinder output from all 47 species
Dcu_g02623	No alias	component *(uL3c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Dde_g02079	No alias	component *(uL3c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
GSVIVT01019355001	No alias	50S ribosomal protein L3, chloroplastic OS=Spinacia oleracea	0.04	OrthoFinder output from all 47 species
Gb_26251	No alias	component psRPL3 of large ribosomal subunit proteome	0.02	OrthoFinder output from all 47 species
LOC_Os02g04460.1	LOC_Os02g04460	component psRPL3 of large ribosomal subunit proteome	0.05	OrthoFinder output from all 47 species
Len_g00379	No alias	component *(uL3c) of large plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Lfl_g10299	No alias	component *(uL3c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Mp1g03320.1	No alias	component psRPL3 of large ribosomal subunit proteome	0.05	OrthoFinder output from all 47 species
Nbi_g00713	No alias	component *(uL3c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Pir_g05542	No alias	component *(uL3c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Pp3c16_1020V3.1	Pp3c16_1020	Ribosomal protein L3 family protein	0.02	OrthoFinder output from all 47 species
Pp3c6_28830V3.1	Pp3c6_28830	Ribosomal protein L3 family protein	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0060.g015211	No alias	component *(uL3c) of large plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Solyc06g051200.3.1	Solyc06g051200	component psRPL3 of large ribosomal subunit proteome	0.04	OrthoFinder output from all 47 species
Spa_g05012	No alias	component *(uL3c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0020037	heme binding	IEP	HCCA
MF	GO:0046906	tetrapyrrole binding	IEP	HCCA
MF	GO:0051536	iron-sulfur cluster binding	IEP	HCCA
MF	GO:0051540	metal cluster binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000597	Ribosomal_L3	170	257

External Links

No external refs found!

Sam_g38828

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation