Lfl_g29343 (RPS18A, PFL, PFL1)

Aliases : RPS18A, PFL, PFL1

Description : component *(uS13) of small ribosomal-subunit (SSU) proteome & original description: none

Gene families : OG0001648 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001648_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Lfl_g29343
Cluster	HCCA: Cluster_34

Target	Alias	Description	ECC score	Gene Family Method
AT1G34030	No alias	Ribosomal protein S13/S18 family	0.03	OrthoFinder output from all 47 species
AT4G09800	RPS18C	S18 ribosomal protein	0.02	OrthoFinder output from all 47 species
Cre06.g272950	RPS18A, PFL, PFL1	Protein biosynthesis.cytosolic ribosome.small subunit...	0.03	OrthoFinder output from all 47 species
LOC_Os03g58050.1	RPS18A, PFL,...	component RPS18 of SSU proteome	0.02	OrthoFinder output from all 47 species
Lfl_g09543	RPS18A, PFL, PFL1	component *(uS13) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Lfl_g33612	RPS18A, PFL, PFL1	component *(uS13) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Mp1g07420.1	RPS18A, PFL, PFL1	component RPS18 of SSU proteome	0.01	OrthoFinder output from all 47 species
Mp5g02820.1	RPS18A, PFL, PFL1	component RPS18 of SSU proteome	0.02	OrthoFinder output from all 47 species
Pp3c16_2090V3.1	RPS18A, PFL,...	Ribosomal protein S13/S18 family	0.02	OrthoFinder output from all 47 species
Zm00001e005967_P001	RPS18A, PFL,...	component RPS18 of SSU proteome	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0008883	glutamyl-tRNA reductase activity	IEP	HCCA
MF	GO:0016620	oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	IEP	HCCA
MF	GO:0016903	oxidoreductase activity, acting on the aldehyde or oxo group of donors	IEP	HCCA
BP	GO:0033013	tetrapyrrole metabolic process	IEP	HCCA
BP	GO:0033014	tetrapyrrole biosynthetic process	IEP	HCCA
MF	GO:0050661	NADP binding	IEP	HCCA
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001892	Ribosomal_S13	14	142

External Links

No external refs found!

Lfl_g29343 (RPS18A, PFL, PFL1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation