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  5. Sam_g40025

Sam_g40025


Description : not classified & original description: none


Gene families : OG0000449 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000449_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g40025
Cluster HCCA: Cluster_168

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00061p00175030 evm_27.TU.AmTr_v1... BTB/POZ domain-containing protein At5g47800... 0.05 OrthoFinder output from all 47 species
AT1G67900 No alias Phototropic-responsive NPH3 family protein 0.02 OrthoFinder output from all 47 species
AT2G23050 NPY4 Phototropic-responsive NPH3 family protein 0.02 OrthoFinder output from all 47 species
AT4G31820 MAB4, NPY1, ENP Phototropic-responsive NPH3 family protein 0.03 OrthoFinder output from all 47 species
Ala_g21688 RPT3, NPH3, JK218 substrate adaptor *(NPH3) of CUL3-BTB E3 ubiquitin... 0.03 OrthoFinder output from all 47 species
Als_g08124 No alias substrate adaptor of CUL3-based E3 ubiquitin ligase... 0.04 OrthoFinder output from all 47 species
Als_g13391 No alias substrate adaptor of CUL3-based E3 ubiquitin ligase... 0.03 OrthoFinder output from all 47 species
Aob_g19940 No alias substrate adaptor of CUL3-based E3 ubiquitin ligase... 0.02 OrthoFinder output from all 47 species
Aop_g09592 RPT3, NPH3, JK218 substrate adaptor of CUL3-based E3 ubiquitin ligase... 0.02 OrthoFinder output from all 47 species
Aop_g33236 No alias substrate adaptor of CUL3-based E3 ubiquitin ligase... 0.03 OrthoFinder output from all 47 species
Aspi01Gene08949.t1 Aspi01Gene08949 substrate adaptor of CUL3-based E3 ubiquitin ligase... 0.03 OrthoFinder output from all 47 species
Aspi01Gene59329.t1 RPT3, NPH3,... substrate adaptor *(NPH3) of CUL3-BTB E3 ubiquitin... 0.02 OrthoFinder output from all 47 species
Azfi_s0116.g046412 No alias not classified & original description: CDS=1316-3601 0.03 OrthoFinder output from all 47 species
Cba_g03356 RPT3, NPH3, JK218 substrate adaptor *(NPH3) of CUL3-BTB E3 ubiquitin... 0.05 OrthoFinder output from all 47 species
Ceric.11G059700.1 Ceric.11G059700 substrate adaptor of CUL3-based E3 ubiquitin ligase... 0.03 OrthoFinder output from all 47 species
Ceric.32G010700.1 Ceric.32G010700 not classified & original description: pacid=50597870... 0.02 OrthoFinder output from all 47 species
Ceric.34G006100.1 Ceric.34G006100 substrate adaptor of CUL3-based E3 ubiquitin ligase... 0.03 OrthoFinder output from all 47 species
Dac_g01025 No alias substrate adaptor of CUL3-based E3 ubiquitin ligase... 0.02 OrthoFinder output from all 47 species
Dcu_g08307 No alias substrate adaptor of CUL3-based E3 ubiquitin ligase... 0.03 OrthoFinder output from all 47 species
GSVIVT01000130001 NPY2 BTB/POZ domain-containing protein NPY2 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
GSVIVT01003474001 No alias BTB/POZ domain-containing protein At5g47800... 0.05 OrthoFinder output from all 47 species
GSVIVT01012508001 RPT3, NPH3, JK218 Root phototropism protein 3 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
GSVIVT01037852001 NPY2 BTB/POZ domain-containing protein NPY2 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Gb_32606 No alias BTB/POZ domain-containing protein At1g67900... 0.01 OrthoFinder output from all 47 species
LOC_Os02g35970.1 RPT3, NPH3,... component NPH3 of CUL3-BTB E3 ubiquitin ligase complex 0.02 OrthoFinder output from all 47 species
LOC_Os03g10800.2 NPY2, LOC_Os03g10800 BTB/POZ domain-containing protein NPY2 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
Lfl_g10716 No alias substrate adaptor of CUL3-based E3 ubiquitin ligase... 0.02 OrthoFinder output from all 47 species
MA_52004g0010 RPT3, NPH3, JK218 component NPH3 of CUL3-BTB E3 ubiquitin ligase complex 0.03 OrthoFinder output from all 47 species
Mp5g03480.1 No alias BTB/POZ domain-containing protein At1g67900... 0.03 OrthoFinder output from all 47 species
Msp_g13254 RPT3, NPH3, JK218 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g01322 RPT3, NPH3, JK218 substrate adaptor *(NPH3) of CUL3-BTB E3 ubiquitin... 0.02 OrthoFinder output from all 47 species
Ore_g08905 No alias substrate adaptor of CUL3-based E3 ubiquitin ligase... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0070.g016653 RPT3, NPH3, JK218 substrate adaptor *(NPH3) of CUL3-BTB E3 ubiquitin... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0081.g018005 No alias substrate adaptor *(NPY) of CUL3-BTB E3 ubiquitin ligase... 0.02 OrthoFinder output from all 47 species
Sam_g29392 No alias substrate adaptor *(NPH3) of CUL3-BTB E3 ubiquitin... 0.04 OrthoFinder output from all 47 species
Sam_g36660 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Solyc01g098820.3.1 RPT3, NPH3,... Coleoptile phototropism protein 1 OS=Oryza sativa subsp.... 0.04 OrthoFinder output from all 47 species
Spa_g14756 RPT3, NPH3, JK218 substrate adaptor *(NPH3) of CUL3-BTB E3 ubiquitin... 0.02 OrthoFinder output from all 47 species
Spa_g22065 No alias substrate adaptor of CUL3-based E3 ubiquitin ligase... 0.04 OrthoFinder output from all 47 species
Tin_g01198 RPT3, NPH3, JK218 substrate adaptor *(NPH3) of CUL3-BTB E3 ubiquiTin... 0.04 OrthoFinder output from all 47 species
Zm00001e007811_P001 Zm00001e007811 BTB/POZ domain-containing protein At1g67900... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0030599 pectinesterase activity IEP HCCA
BP GO:0032392 DNA geometric change IEP HCCA
BP GO:0032508 DNA duplex unwinding IEP HCCA
BP GO:0042545 cell wall modification IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
MF GO:0052689 carboxylic ester hydrolase activity IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
BP GO:0071555 cell wall organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR000210 BTB/POZ_dom 43 131
IPR027356 NPH3_dom 213 373
No external refs found!