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  5. Sam_g40880

Sam_g40880


Description : not classified & original description: none


Gene families : OG0000236 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000236_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g40880
Cluster HCCA: Cluster_25

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00025p00226120 evm_27.TU.AmTr_v1... No description available 0.02 OrthoFinder output from all 47 species
AMTR_s00059p00172960 evm_27.TU.AmTr_v1... No description available 0.04 OrthoFinder output from all 47 species
AMTR_s00138p00069300 evm_27.TU.AmTr_v1... No description available 0.03 OrthoFinder output from all 47 species
AT2G39690 No alias Protein of unknown function, DUF547 0.03 OrthoFinder output from all 47 species
AT3G12540 No alias Protein of unknown function, DUF547 0.02 OrthoFinder output from all 47 species
AT4G37080 No alias Protein of unknown function, DUF547 0.02 OrthoFinder output from all 47 species
AT5G42690 No alias Protein of unknown function, DUF547 0.02 OrthoFinder output from all 47 species
AT5G60720 No alias Protein of unknown function, DUF547 0.04 OrthoFinder output from all 47 species
Adi_g103810 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g115514 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g25226 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g03826 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g10150 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g13551 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g16129 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g36638 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g07461 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g08833 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g11890 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g05260 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g38369 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g39103 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g58052 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.02G060000.1 Ceric.02G060000 not classified & original description: pacid=50584416... 0.03 OrthoFinder output from all 47 species
Ceric.05G072100.1 Ceric.05G072100 not classified & original description: pacid=50579173... 0.03 OrthoFinder output from all 47 species
Ceric.12G063900.1 Ceric.12G063900 not classified & original description: pacid=50600480... 0.02 OrthoFinder output from all 47 species
Ceric.25G053000.1 Ceric.25G053000 not classified & original description: pacid=50593159... 0.04 OrthoFinder output from all 47 species
Dac_g03837 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g13842 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g14778 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g16017 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g50801 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g20241 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g06906 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01002634001 No alias No description available 0.02 OrthoFinder output from all 47 species
GSVIVT01002886001 No alias No description available 0.02 OrthoFinder output from all 47 species
GSVIVT01025228001 No alias No description available 0.02 OrthoFinder output from all 47 species
GSVIVT01029452001 No alias No description available 0.02 OrthoFinder output from all 47 species
Gb_10011 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Gb_17913 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
LOC_Os03g13130.2 LOC_Os03g13130 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os03g64230.1 LOC_Os03g64230 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
LOC_Os06g47770.1 LOC_Os06g47770 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
LOC_Os08g40420.1 LOC_Os08g40420 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os09g28850.1 LOC_Os09g28850 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
LOC_Os10g41040.1 LOC_Os10g41040 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Len_g59225 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g05619 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g37222 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_124933g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_19648g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Mp1g27890.1 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Msp_g15905 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g21403 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g03119 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g03702 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g10137 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g13997 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g17419 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g62402 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0011.g005362 No alias not classified & original description: CDS=1-1965 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0075.g017355 No alias not classified & original description: CDS=571-2316 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0090.g018756 No alias not classified & original description: CDS=1-2328 0.04 OrthoFinder output from all 47 species
Smo121495 No alias No description available 0.02 OrthoFinder output from all 47 species
Smo424121 No alias No description available 0.02 OrthoFinder output from all 47 species
Smo74798 No alias No description available 0.02 OrthoFinder output from all 47 species
Solyc01g109270.3.1 Solyc01g109270 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Solyc10g051030.2.1 Solyc10g051030 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Solyc11g069840.3.1 Solyc11g069840 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Spa_g13793 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g14701 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g26671 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e000910_P003 Zm00001e000910 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Zm00001e005808_P001 Zm00001e005808 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Zm00001e011613_P001 Zm00001e011613 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Zm00001e011955_P001 Zm00001e011955 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Zm00001e013087_P001 Zm00001e013087 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Zm00001e034560_P003 Zm00001e034560 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003968 RNA-dependent RNA polymerase activity IEP HCCA
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006952 defense response IEP HCCA
BP GO:0007275 multicellular organism development IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
MF GO:0030695 GTPase regulator activity IEP HCCA
BP GO:0032501 multicellular organismal process IEP HCCA
BP GO:0032502 developmental process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0048856 anatomical structure development IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
MF GO:0140678 molecular function inhibitor activity IEP HCCA
InterPro domains Description Start Stop
IPR006869 DUF547 412 546
IPR025757 MIP1_Leuzipper 60 99
No external refs found!