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  5. Sam_g40903

Sam_g40903


Description : bHLH-type transcription factor & original description: none


Gene families : OG0000019 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g40903

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00129p00124210 LRL1,... RNA biosynthesis.transcriptional activation.bHLH... 0.03 OrthoFinder output from all 47 species
AT5G64980 No alias unknown protein; BEST Arabidopsis thaliana protein match... 0.02 OrthoFinder output from all 47 species
Adi_g021895 CIB1 regulatory protein (CIB) of blue light perception &... 0.02 OrthoFinder output from all 47 species
Adi_g044914 SPT bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g065834 LRL1 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g084441 No alias bHLH-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g39083 SPT bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g05647 No alias bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g06340 No alias bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g54309 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g36714 PIL5, PIF1 bHLH-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g00863 SPT bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g01707 PIF3, POC1, PAP3 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g18718 SPT bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g03638 LRL3 bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os03g12940.1 LOC_Os03g12940 transcription factor (bHLH). component FBX of SCF E3... 0.03 OrthoFinder output from all 47 species
LOC_Os03g58330.1 UNE12, LOC_Os03g58330 transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
LOC_Os04g52770.1 PIL5, PIF1,... transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
LOC_Os07g05010.2 PIL5, PIF1,... transcription factor (bHLH). PIF red/far-red light... 0.03 OrthoFinder output from all 47 species
Len_g24250 SPT bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g06200 No alias bHLH-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g06729 SPT bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g40022 No alias regulatory protein (CIB) of blue light perception &... 0.02 OrthoFinder output from all 47 species
Msp_g35112 PIF3, POC1, PAP3 bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g19414 No alias bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g29044 CIB1 regulatory protein (CIB) of blue light perception &... 0.02 OrthoFinder output from all 47 species
Ore_g43162 No alias regulatory protein (CIB) of blue light perception &... 0.04 OrthoFinder output from all 47 species
Pir_g18900 SPT bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g02210 SPT bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g08425 LRL3 bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0044.g013028 No alias bHLH-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0051.g013890 LRL1 bHLH-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0142.g022819 PIL5, PIF1 bHLH-type transcription factor & original description: CDS=1-1485 0.02 OrthoFinder output from all 47 species
Spa_g22941 SPT bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g08764 No alias bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g13566 SPT bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e016160_P003 SPT, Zm00001e016160 transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0046983 protein dimerization activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003724 RNA helicase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
MF GO:0008186 ATP-dependent activity, acting on RNA IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
InterPro domains Description Start Stop
IPR011598 bHLH_dom 185 231
No external refs found!