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  5. Sam_g41673

Sam_g41673


Description : not classified & original description: none


Gene families : OG0000195 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000195_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g41673

Target Alias Description ECC score Gene Family Method Actions
AT1G62790 No alias Bifunctional inhibitor/lipid-transfer protein/seed... 0.04 OrthoFinder output from all 47 species
AT2G44290 No alias Bifunctional inhibitor/lipid-transfer protein/seed... 0.02 OrthoFinder output from all 47 species
AT2G48130 No alias Bifunctional inhibitor/lipid-transfer protein/seed... 0.03 OrthoFinder output from all 47 species
AT3G43720 No alias Bifunctional inhibitor/lipid-transfer protein/seed... 0.02 OrthoFinder output from all 47 species
AT4G14815 No alias Bifunctional inhibitor/lipid-transfer protein/seed... 0.02 OrthoFinder output from all 47 species
Ala_g04739 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g15133 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0054.g033619 No alias not classified & original description: CDS=1-465 0.02 OrthoFinder output from all 47 species
Ceric.35G030300.1 Ceric.35G030300 not classified & original description: pacid=50581753... 0.03 OrthoFinder output from all 47 species
Dac_g08117 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g02508 No alias arabinogalactan protein *(Xylogen) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g06089 LTPG1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01008272001 No alias Cell wall.cell wall proteins.hydroxyproline-rich... 0.02 OrthoFinder output from all 47 species
Gb_02455 No alias xylogen-type arabinogalactan protein 0.03 OrthoFinder output from all 47 species
Gb_24349 No alias xylogen-type arabinogalactan protein 0.03 OrthoFinder output from all 47 species
LOC_Os03g58940.1 LOC_Os03g58940 xylogen-type arabinogalactan protein 0.02 OrthoFinder output from all 47 species
LOC_Os06g47200.1 LOC_Os06g47200 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Msp_g06696 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g07639 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0073.g017064 No alias arabinogalactan protein *(Xylogen) & original... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0169.g024327 No alias not classified & original description: CDS=1-432 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0169.g024328 No alias not classified & original description: CDS=429-857 0.05 OrthoFinder output from all 47 species
Zm00001e001521_P002 Zm00001e001521 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Zm00001e005959_P003 Zm00001e005959 xylogen-type arabinogalactan protein 0.03 OrthoFinder output from all 47 species
Zm00001e030289_P001 Zm00001e030289 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Zm00001e033062_P001 Zm00001e033062 xylogen-type arabinogalactan protein 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008171 O-methyltransferase activity IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
InterPro domains Description Start Stop
IPR016140 Bifunc_inhib/LTP/seed_store 12 95
No external refs found!