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  5. Sam_g43944

Sam_g43944


Description : regulatory protein (CIB) of blue light perception & original description: none


Gene families : OG0000019 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g43944

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00079p00137860 BEE3,... External stimuli response.light.UV-A/blue... 0.03 OrthoFinder output from all 47 species
AT1G18400 BEE1 BR enhanced expression 1 0.02 OrthoFinder output from all 47 species
AT1G25330 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.03 OrthoFinder output from all 47 species
AT1G27740 RSL4 root hair defective 6-like 4 0.03 OrthoFinder output from all 47 species
AT1G59640 BPEp, ZCW32, BPE, BPEub BIG PETAL P 0.03 OrthoFinder output from all 47 species
AT1G66470 RHD6 ROOT HAIR DEFECTIVE6 0.04 OrthoFinder output from all 47 species
AT2G14760 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.02 OrthoFinder output from all 47 species
AT4G28790 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.02 OrthoFinder output from all 47 species
AT4G28800 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.02 OrthoFinder output from all 47 species
AT4G33880 RSL2 ROOT HAIR DEFECTIVE 6-LIKE 2 0.02 OrthoFinder output from all 47 species
AT5G09750 HEC3 basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.02 OrthoFinder output from all 47 species
AT5G37800 ATRSL1, RSL1 RHD SIX-LIKE 1 0.03 OrthoFinder output from all 47 species
AT5G67110 ALC basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g048981 No alias regulatory protein (CIB) of blue light perception &... 0.03 OrthoFinder output from all 47 species
Adi_g056779 ATRSL1, RSL1 bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g17417 CIB1 regulatory protein (CIB) of blue light perception &... 0.02 OrthoFinder output from all 47 species
Aev_g17433 CIB1 regulatory protein (CIB) of blue light perception &... 0.02 OrthoFinder output from all 47 species
Aev_g30943 SPT bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g20444 No alias regulatory protein (CIB) of blue light perception &... 0.03 OrthoFinder output from all 47 species
Ala_g21170 LRL3 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g21810 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g26152 No alias regulatory protein (CIB) of blue light perception &... 0.03 OrthoFinder output from all 47 species
Als_g04401 SPT bHLH-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Als_g22777 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g28177 No alias regulatory protein (CIB) of blue light perception &... 0.02 OrthoFinder output from all 47 species
Als_g49316 SPT bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g49595 LRL3 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g61959 PIL5, PIF1 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g21168 LRL3 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g15698 No alias regulatory protein (CIB) of blue light perception &... 0.03 OrthoFinder output from all 47 species
Aop_g41589 RSL2 bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g56154 BPEp, ZCW32, BPE, BPEub regulatory protein (CIB) of blue light perception &... 0.03 OrthoFinder output from all 47 species
Aspi01Gene01205.t1 CIB1, Aspi01Gene01205 regulatory protein (CIB) of blue light perception &... 0.02 OrthoFinder output from all 47 species
Aspi01Gene04163.t2 Aspi01Gene04163 bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene05129.t1 RSL2, Aspi01Gene05129 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene37755.t1 Aspi01Gene37755 regulatory protein (CIB) of blue light perception &... 0.03 OrthoFinder output from all 47 species
Aspi01Gene43314.t1 CIB1, Aspi01Gene43314 regulatory protein (CIB) of blue light perception &... 0.03 OrthoFinder output from all 47 species
Azfi_s0056.g034059 RHD6 bHLH-type transcription factor & original description:... 0.04 OrthoFinder output from all 47 species
Cba_g01170 HEC3 bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g15079 No alias regulatory protein (CIB) of blue light perception &... 0.03 OrthoFinder output from all 47 species
Ceric.04G092700.1 Ceric.04G092700 bHLH-type transcription factor & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.07G026100.1 LRL3, Ceric.07G026100 bHLH-type transcription factor & original description:... 0.02 OrthoFinder output from all 47 species
Ceric.08G020500.1 RSL2, Ceric.08G020500 bHLH-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.16G014000.1 RHD6, Ceric.16G014000 bHLH-type transcription factor & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.19G069900.1 LRL3, Ceric.19G069900 bHLH-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.1Z051300.1 LRL3, Ceric.1Z051300 bHLH-type transcription factor & original description:... 0.02 OrthoFinder output from all 47 species
Ceric.26G029500.1 Ceric.26G029500 regulatory protein (CIB) of blue light perception &... 0.04 OrthoFinder output from all 47 species
Ceric.32G068300.1 Ceric.32G068300 regulatory protein (CIB) of blue light perception &... 0.03 OrthoFinder output from all 47 species
Dac_g13296 LRL3 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g16940 No alias regulatory protein (CIB) of blue light perception &... 0.03 OrthoFinder output from all 47 species
Dcu_g19533 No alias regulatory protein (CIB) of blue light perception &... 0.02 OrthoFinder output from all 47 species
Dcu_g51679 HEC2 bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g26546 No alias regulatory protein (CIB) of blue light perception &... 0.02 OrthoFinder output from all 47 species
Ehy_g03657 LRL3 bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g05767 No alias regulatory protein (CIB) of blue light perception &... 0.02 OrthoFinder output from all 47 species
Ehy_g09150 PIF3, POC1, PAP3 bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01008628001 No alias External stimuli response.light.UV-A/blue... 0.02 OrthoFinder output from all 47 species
GSVIVT01011873001 No alias External stimuli response.light.UV-A/blue... 0.02 OrthoFinder output from all 47 species
GSVIVT01030846001 RHD6 RNA biosynthesis.transcriptional activation.bHLH... 0.02 OrthoFinder output from all 47 species
Gb_05320 LRL3 transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
Gb_30387 UNE10 transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
LOC_Os01g61480.1 LOC_Os01g61480 transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
LOC_Os02g47660.1 CIB1, LOC_Os02g47660 transcription factor (bHLH). transcriptional regulator (CIB) 0.03 OrthoFinder output from all 47 species
LOC_Os03g10770.1 RSL2, LOC_Os03g10770 transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
LOC_Os03g58830.1 LOC_Os03g58830 transcription factor (bHLH). transcriptional regulator (CIB) 0.02 OrthoFinder output from all 47 species
LOC_Os04g28280.1 LOC_Os04g28280 transcription factor (bHLH). transcriptional regulator (CIB) 0.02 OrthoFinder output from all 47 species
LOC_Os05g46370.1 LOC_Os05g46370 transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
LOC_Os06g06900.1 SPT, LOC_Os06g06900 transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
LOC_Os06g41060.1 LOC_Os06g41060 transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
LOC_Os06g47980.1 LOC_Os06g47980 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
LOC_Os07g39940.1 RSL2, LOC_Os07g39940 transcription factor (bHLH) 0.05 OrthoFinder output from all 47 species
LOC_Os11g25560.1 LOC_Os11g25560 transcription factor (bHLH). transcriptional regulator (CIB) 0.05 OrthoFinder output from all 47 species
Len_g15871 HEC1 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Len_g48771 RSL2 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g20995 BPEp, ZCW32, BPE, BPEub regulatory protein (CIB) of blue light perception &... 0.02 OrthoFinder output from all 47 species
MA_100071g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_10344244g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_158362g0010 CIB5 transcription factor (bHLH). transcriptional regulator (CIB) 0.03 OrthoFinder output from all 47 species
MA_42080g0010 CIB1 transcription factor (bHLH). transcriptional regulator (CIB) 0.02 OrthoFinder output from all 47 species
MA_78485g0010 RSL4 transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
MA_83500g0010 HEC1 transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
MA_88831g0010 No alias transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
MA_9115341g0010 No alias transcription factor (bHLH). transcriptional regulator (CIB) 0.02 OrthoFinder output from all 47 species
Msp_g06114 No alias regulatory protein (CIB) of blue light perception &... 0.03 OrthoFinder output from all 47 species
Msp_g24040 No alias regulatory protein (CIB) of blue light perception &... 0.03 OrthoFinder output from all 47 species
Nbi_g03137 No alias regulatory protein (CIB) of blue light perception &... 0.03 OrthoFinder output from all 47 species
Pnu_g27016 LRL3 bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pp3c17_17000V3.1 LRL1, Pp3c17_17000 LJRHL1-like 1 0.02 OrthoFinder output from all 47 species
Ppi_g02784 LRL3 bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g13554 No alias regulatory protein (CIB) of blue light perception &... 0.02 OrthoFinder output from all 47 species
Ppi_g33350 LRL3 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g60624 CIB1 regulatory protein (CIB) of blue light perception &... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0237.g026567 No alias regulatory protein (CIB) of blue light perception &... 0.03 OrthoFinder output from all 47 species
Smo413232 RHD6 RNA biosynthesis.transcriptional activation.bHLH... 0.02 OrthoFinder output from all 47 species
Smo425336 LRL1 RNA biosynthesis.transcriptional activation.bHLH... 0.04 OrthoFinder output from all 47 species
Smo444782 LRL2 RNA biosynthesis.transcriptional activation.bHLH... 0.03 OrthoFinder output from all 47 species
Solyc01g107140.3.1 Solyc01g107140 transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
Solyc02g062690.3.1 BEE2, Solyc02g062690 transcription factor (bHLH). transcriptional regulator (CIB) 0.02 OrthoFinder output from all 47 species
Solyc03g044460.1.1 HEC2, Solyc03g044460 transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
Solyc04g007300.4.1 BEE3, Solyc04g007300 transcription factor (bHLH). transcriptional regulator (CIB) 0.02 OrthoFinder output from all 47 species
Solyc04g077960.1.1 RSL2, Solyc04g077960 transcription factor (bHLH) 0.04 OrthoFinder output from all 47 species
Solyc05g006650.3.1 Solyc05g006650 transcription factor (bHLH). transcriptional regulator (CIB) 0.02 OrthoFinder output from all 47 species
Solyc06g072520.2.1 Solyc06g072520 transcription factor (bHLH). transcriptional regulator (CIB) 0.02 OrthoFinder output from all 47 species
Solyc06g083170.3.1 Solyc06g083170 transcription factor (bHLH). transcriptional regulator (CIB) 0.03 OrthoFinder output from all 47 species
Solyc12g010170.2.1 LRL1, Solyc12g010170 transcription factor (bHLH) 0.05 OrthoFinder output from all 47 species
Solyc12g088380.1.1 RSL2, Solyc12g088380 transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
Solyc12g098620.2.1 Solyc12g098620 transcription factor (bHLH). transcriptional regulator (CIB) 0.03 OrthoFinder output from all 47 species
Spa_g03670 RSL2 bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g05058 No alias regulatory protein (CIB) of blue light perception &... 0.03 OrthoFinder output from all 47 species
Spa_g09944 No alias regulatory protein (CIB) of blue light perception &... 0.03 OrthoFinder output from all 47 species
Spa_g10023 No alias regulatory protein (CIB) of blue light perception &... 0.02 OrthoFinder output from all 47 species
Spa_g31230 No alias bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g33531 RHD6 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g38143 ATRSL1, RSL1 bHLH-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g39495 No alias bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g41478 RSL2 bHLH-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g41479 RSL2 bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g41645 RHD6 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g51778 No alias regulatory protein (CIB) of blue light perception &... 0.02 OrthoFinder output from all 47 species
Tin_g21602 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g45190 LRL3 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e009823_P002 LRL1, Zm00001e009823 transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
Zm00001e010060_P001 Zm00001e010060 transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
Zm00001e010540_P001 Zm00001e010540 transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
Zm00001e011084_P002 Zm00001e011084 transcription factor (bHLH). transcriptional regulator (CIB) 0.02 OrthoFinder output from all 47 species
Zm00001e011410_P001 Zm00001e011410 transcription factor (bHLH). transcriptional regulator (CIB) 0.02 OrthoFinder output from all 47 species
Zm00001e015045_P002 Zm00001e015045 transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
Zm00001e015610_P001 RHD6, Zm00001e015610 transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
Zm00001e019392_P001 Zm00001e019392 transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
Zm00001e022005_P003 Zm00001e022005 transcription factor (bHLH). transcriptional regulator (CIB) 0.03 OrthoFinder output from all 47 species
Zm00001e025656_P001 RHD6, Zm00001e025656 transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
Zm00001e036318_P001 LRL1, Zm00001e036318 transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
Zm00001e038765_P001 Zm00001e038765 transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0046983 protein dimerization activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004521 endoribonuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
BP GO:0008610 lipid biosynthetic process IEP HCCA
MF GO:0009678 pyrophosphate hydrolysis-driven proton transmembrane transporter activity IEP HCCA
MF GO:0015399 primary active transmembrane transporter activity IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0019829 ATPase-coupled monoatomic cation transmembrane transporter activity IEP HCCA
MF GO:0022853 active monoatomic ion transmembrane transporter activity IEP HCCA
BP GO:0034220 monoatomic ion transmembrane transport IEP HCCA
MF GO:0042625 ATPase-coupled ion transmembrane transporter activity IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
MF GO:0044769 ATPase activity, coupled to transmembrane movement of ions, rotational mechanism IEP HCCA
MF GO:0046961 proton-transporting ATPase activity, rotational mechanism IEP HCCA
MF GO:0051287 NAD binding IEP HCCA
InterPro domains Description Start Stop
IPR011598 bHLH_dom 444 491
No external refs found!