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  5. Sam_g44116

Sam_g44116


Description : component *(eL34) of large ribosomal-subunit (LSU) proteome & original description: none


Gene families : OG0000940 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000940_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g44116
Cluster HCCA: Cluster_74

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00260490 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.05 OrthoFinder output from all 47 species
AT1G26880 No alias Ribosomal protein L34e superfamily protein 0.04 OrthoFinder output from all 47 species
AT3G28900 No alias Ribosomal protein L34e superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g023873 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Adi_g049423 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ala_g05903 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Aob_g12026 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Aop_g25989 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Azfi_s0045.g029897 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ceric.29G078700.1 Ceric.29G078700 component *(eL34) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000632.3 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.02 OrthoFinder output from all 47 species
Cre16.g661050 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.02 OrthoFinder output from all 47 species
Dac_g02443 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Dcu_g20175 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Dcu_g27998 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Dcu_g43816 RPL34 component *(eL34) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ehy_g19232 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Gb_36060 No alias component RPL34 of LSU proteome component 0.02 OrthoFinder output from all 47 species
LOC_Os08g06040.1 LOC_Os08g06040 component RPL34 of LSU proteome component 0.04 OrthoFinder output from all 47 species
LOC_Os09g24690.1 LOC_Os09g24690 component RPL34 of LSU proteome component 0.03 OrthoFinder output from all 47 species
Len_g06750 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Lfl_g31825 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
MA_109553g0010 No alias component RPL34 of LSU proteome component 0.03 OrthoFinder output from all 47 species
MA_175574g0010 No alias component RPL34 of LSU proteome component 0.05 OrthoFinder output from all 47 species
MA_7581523g0010 No alias component RPL34 of LSU proteome component 0.02 OrthoFinder output from all 47 species
Msp_g09133 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Msp_g39040 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Pp3c11_2940V3.1 RPL34, Pp3c11_2940 Ribosomal protein L34e superfamily protein 0.03 OrthoFinder output from all 47 species
Pp3c1_1800V3.1 RPL34, Pp3c1_1800 Ribosomal protein L34e superfamily protein 0.03 OrthoFinder output from all 47 species
Pp3c25_11980V3.1 Pp3c25_11980 Ribosomal protein L34e superfamily protein 0.03 OrthoFinder output from all 47 species
Pp3c2_34570V3.1 Pp3c2_34570 Ribosomal protein L34e superfamily protein 0.02 OrthoFinder output from all 47 species
Pp3c7_21380V3.1 Pp3c7_21380 Ribosomal protein L34e superfamily protein 0.02 OrthoFinder output from all 47 species
Ppi_g25958 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Sam_g05824 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Sam_g14297 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Sam_g22792 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Sam_g23757 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Sam_g41634 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Solyc06g069860.4.1 Solyc06g069860 component RPL34 of LSU proteome component 0.02 OrthoFinder output from all 47 species
Spa_g28558 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Tin_g42684 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Zm00001e004116_P001 Zm00001e004116 component RPL34 of LSU proteome component 0.02 OrthoFinder output from all 47 species
Zm00001e021733_P002 Zm00001e021733 component RPL34 of LSU proteome component 0.02 OrthoFinder output from all 47 species
Zm00001e022460_P001 Zm00001e022460 component RPL34 of LSU proteome component 0.03 OrthoFinder output from all 47 species
Zm00001e034114_P001 Zm00001e034114 component RPL34 of LSU proteome component 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003746 translation elongation factor activity IEP HCCA
MF GO:0005092 GDP-dissociation inhibitor activity IEP HCCA
MF GO:0005094 Rho GDP-dissociation inhibitor activity IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006414 translational elongation IEP HCCA
BP GO:0007264 small GTPase mediated signal transduction IEP HCCA
BP GO:0007265 Ras protein signal transduction IEP HCCA
BP GO:0007266 Rho protein signal transduction IEP HCCA
CC GO:0015934 large ribosomal subunit IEP HCCA
MF GO:0030695 GTPase regulator activity IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
BP GO:0035556 intracellular signal transduction IEP HCCA
CC GO:0044391 ribosomal subunit IEP HCCA
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR008195 Ribosomal_L34Ae 1 94
No external refs found!