Sam_g46518

Description : component *(eS24) of small ribosomal-subunit (SSU) proteome & original description: none

Gene families : OG0000886 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000886_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sam_g46518
Cluster	HCCA: Cluster_99

Target	Alias	Description	ECC score	Gene Family Method
AT5G28060	No alias	Ribosomal protein S24e family protein	0.03	OrthoFinder output from all 47 species
Adi_g102131	No alias	component *(eS24) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Adi_g127987	No alias	component *(eS24) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Ala_g15047	No alias	component *(eS24) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Ala_g18691	No alias	component *(eS24) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Ala_g21106	No alias	component *(eS24) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Aob_g10630	No alias	component *(eS24) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Aob_g38531	No alias	component *(eS24) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Aop_g17637	No alias	component *(eS24) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Cba_g74583	No alias	component *(eS24) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000361.64	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.02	OrthoFinder output from all 47 species
Cre10.g456200	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.02	OrthoFinder output from all 47 species
Dcu_g27599	No alias	component *(eS24) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Gb_38272	No alias	component RPS24 of SSU proteome	0.03	OrthoFinder output from all 47 species
MA_119841g0010	No alias	component RPS24 of SSU proteome	0.02	OrthoFinder output from all 47 species
Mp1g10680.1	No alias	component RPS24 of SSU proteome	0.03	OrthoFinder output from all 47 species
Nbi_g39203	No alias	component *(eS24) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Pir_g54928	No alias	component *(eS24) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Pp3c12_10760V3.1	Pp3c12_10760	Ribosomal protein S24e family protein	0.02	OrthoFinder output from all 47 species
Ppi_g51227	No alias	component *(eS24) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Solyc01g097870.3.1	Solyc01g097870	component RPS24 of SSU proteome	0.02	OrthoFinder output from all 47 species
Solyc09g065330.3.1	Solyc09g065330	component RPS24 of SSU proteome	0.03	OrthoFinder output from all 47 species
Spa_g19361	No alias	component *(eS24) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Tin_g29759	No alias	component *(eS24) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000413	protein peptidyl-prolyl isomerization	IEP	HCCA
MF	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	IEP	HCCA
CC	GO:0005576	extracellular region	IEP	HCCA
MF	GO:0008061	chitin binding	IEP	HCCA
MF	GO:0016853	isomerase activity	IEP	HCCA
MF	GO:0016859	cis-trans isomerase activity	IEP	HCCA
BP	GO:0018193	peptidyl-amino acid modification	IEP	HCCA
BP	GO:0018208	peptidyl-proline modification	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001976	Ribosomal_S24e	25	102

External Links

No external refs found!

Sam_g46518

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation