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  5. Sam_g48012

Sam_g48012


Description : H-type thioredoxin *(Trx-H) & original description: none


Gene families : OG0000082 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000082_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g48012
Cluster HCCA: Cluster_72

Target Alias Description ECC score Gene Family Method Actions
Adi_g044570 ATHM4, TRX-M4, ATM4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g079951 ATO2, TO2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g32942 ATH9, TH9, TRX H9 H-type thioredoxin *(Trx-H) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g39724 ATH9, TH9, TRX H9 H-type thioredoxin *(Trx-H) & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g09293 TRXH2, TRX2,... H-type thioredoxin *(Trx-H) & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g38676 ATTRX3, ATTRXH3,... H-type thioredoxin *(Trx-H) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g61335 ATTRX1, ATTRX H1, TRX1 H-type thioredoxin *(Trx-H) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g69274 ATH5, ATTRX5, TRX5, LIV1 H-type thioredoxin *(Trx-H) & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g17480 ATO2, TO2 O-type thioredoxin *(Trx-O) & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g47045 TRXH2, TRX2,... H-type thioredoxin *(Trx-H) & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g47925 TRXH2, TRX2,... H-type thioredoxin *(Trx-H) & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g59971 TRXF2, ATF2 H-type thioredoxin *(Trx-H) & original description: none 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001041.23 ATTRX1, ATTRX H1, TRX1 Redox homeostasis.cytosol/mitochondrion/nucleus redox... 0.03 OrthoFinder output from all 47 species
Cre09.g391900 ATTRX4, ATH4 Redox homeostasis.cytosol/mitochondrion/nucleus redox... 0.02 OrthoFinder output from all 47 species
Dcu_g27634 ATTRX4, ATH4 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g28524 TRXH2, TRX2,... H-type thioredoxin *(Trx-H) & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g31769 ATTRX1, ATTRX H1, TRX1 H-type thioredoxin *(Trx-H) & original description: none 0.04 OrthoFinder output from all 47 species
MA_916238g0010 ATTRX1, ATTRX H1, TRX1 H-type thioredoxin. protein-S-nitrosothiol reductase (TRX5) 0.02 OrthoFinder output from all 47 species
Msp_g37991 ATTRX1, ATTRX H1, TRX1 H-type thioredoxin *(Trx-H) & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g37992 ATTRX3, ATTRXH3,... H-type thioredoxin *(Trx-H) & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g39810 ATTRX4, ATH4 H-type thioredoxin *(Trx-H) & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g14812 ATH9, TH9, TRX H9 H-type thioredoxin *(Trx-H) & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g21956 ATH5, ATTRX5, TRX5, LIV1 H-type thioredoxin *(Trx-H) & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g19888 ATO2, TO2 O-type thioredoxin *(Trx-O) & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g25888 ATH5, ATTRX5, TRX5, LIV1 H-type thioredoxin *(Trx-H) & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g27675 ATTRX3, ATTRXH3,... H-type thioredoxin *(Trx-H) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g23205 No alias H-type thioredoxin *(Trx-H) & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g31011 No alias H-type thioredoxin *(Trx-H) & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g41042 No alias H-type thioredoxin *(Trx-H) & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g38672 ATTRX1, ATTRX H1, TRX1 H-type thioredoxin *(Trx-H) & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e033005_P001 ATTRX1, ATTRX... H-type thioredoxin. protein-S-nitrosothiol reductase (TRX5) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR013766 Thioredoxin_domain 10 110
No external refs found!