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  5. Sam_g48720

Sam_g48720


Description : subfamily ABCB transporter & original description: none


Gene families : OG0000048 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g48720
Cluster HCCA: Cluster_41

Target Alias Description ECC score Gene Family Method Actions
AT1G27940 PGP13 P-glycoprotein 13 0.03 OrthoFinder output from all 47 species
AT3G28345 No alias ABC transporter family protein 0.04 OrthoFinder output from all 47 species
AT3G28360 PGP16 P-glycoprotein 16 0.03 OrthoFinder output from all 47 species
AT3G62150 PGP21 P-glycoprotein 21 0.02 OrthoFinder output from all 47 species
AT4G25960 PGP2 P-glycoprotein 2 0.02 OrthoFinder output from all 47 species
Adi_g010407 PGP2 subfamily ABCB transporter & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g025752 ABCB19,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g029160 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g056640 ABCB19,... subfamily ABCB transporter & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g056650 ABCB19,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g058585 ABCB19,... subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g067518 PGP1, ABCB1, ATPGP1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g087129 No alias subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g105656 PGP1, ABCB1, ATPGP1 subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g17861 ABCB19,... not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g24244 ABCB19,... subfamily ABCB transporter & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g27372 ABCB19,... subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g29011 PGP10 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g33590 PGP2 subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Als_g18810 PGP2 subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Als_g22635 ABCB19,... subfamily ABCB transporter & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g24610 PGP1, ABCB1, ATPGP1 subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g14003 PGP2 subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g22258 PGP2 subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g29915 PGP1, ABCB1, ATPGP1 subfamily ABCB transporter & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene12320.t2 PGP2, Aspi01Gene12320 subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene28299.t1 Aspi01Gene28299 subfamily ABCB transporter & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene62054.t1 ABCB19,... subfamily ABCB transporter & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0039.g026389 PGP11 subfamily ABCB transporter & original description: CDS=323-4378 0.02 OrthoFinder output from all 47 species
Ceric.02G084300.1 ABCB19,... subfamily ABCB transporter & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.10G031400.1 PGP13, Ceric.10G031400 subfamily ABCB transporter & original description:... 0.05 OrthoFinder output from all 47 species
Ceric.18G013800.1 Ceric.18G013800 subfamily ABCB transporter & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.1Z238200.1 Ceric.1Z238200 subfamily ABCB transporter & original description:... 0.02 OrthoFinder output from all 47 species
Ceric.36G048300.1 Ceric.36G048300 subfamily ABCB transporter & original description:... 0.02 OrthoFinder output from all 47 species
Dac_g06939 PGP13 subfamily ABCB transporter & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g25900 ABCB19,... subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01007586001 No alias Solute transport.primary active transport.ABC... 0.03 OrthoFinder output from all 47 species
GSVIVT01028256001 PGP11 Solute transport.primary active transport.ABC... 0.03 OrthoFinder output from all 47 species
Gb_02468 No alias subfamily ABCB transporter 0.03 OrthoFinder output from all 47 species
Gb_08614 PGP11 subfamily ABCB transporter 0.03 OrthoFinder output from all 47 species
LOC_Os01g18670.1 PGP21, LOC_Os01g18670 subfamily ABCB transporter 0.02 OrthoFinder output from all 47 species
LOC_Os01g29870.1 ATPGP4, PGP4,... ABC transporter B family member 7 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
LOC_Os01g50160.1 PGP11, LOC_Os01g50160 subfamily ABCB transporter 0.02 OrthoFinder output from all 47 species
LOC_Os02g09720.1 LOC_Os02g09720 subfamily ABCB transporter 0.02 OrthoFinder output from all 47 species
LOC_Os05g04610.1 ATPGP4, PGP4,... subfamily ABCB transporter 0.02 OrthoFinder output from all 47 species
Lfl_g33330 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_102299g0010 No alias Putative multidrug resistance protein OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species
MA_1824g0010 No alias Putative multidrug resistance protein OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species
MA_636449g0010 No alias subfamily ABCB transporter 0.02 OrthoFinder output from all 47 species
MA_79399g0010 No alias Putative multidrug resistance protein OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species
Mp2g02920.1 ABCB19,... auxin efflux transporter (ABCB19). subfamily ABCB transporter 0.03 OrthoFinder output from all 47 species
Msp_g17749 ABCB19,... subfamily ABCB transporter & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g26680 PGP11 subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g36979 ABCB19,... subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g08816 ABCB19,... subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g27262 PGP13 subfamily ABCB transporter & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g41769 No alias subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g29606 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g29607 No alias subfamily ABCB transporter & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g30543 PGP18 subfamily ABCB transporter & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g33236 ABCB19,... ABC-B-type transporter *(AMN3) & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g57324 ATPGP4, PGP4, ABCB4, MDR4 subfamily ABCB transporter & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g16181 PGP11 subfamily ABCB transporter & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0080.g017899 PGP11 subfamily ABCB transporter & original description: CDS=362-4450 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0141.g022750 PGP11 subfamily ABCB transporter & original description: CDS=1-3756 0.02 OrthoFinder output from all 47 species
Smo148837 ABCB19,... Solute transport.primary active transport.ABC... 0.03 OrthoFinder output from all 47 species
Smo231714 No alias Solute transport.primary active transport.ABC... 0.03 OrthoFinder output from all 47 species
Smo408755 No alias Solute transport.primary active transport.ABC... 0.02 OrthoFinder output from all 47 species
Smo99885 No alias Solute transport.primary active transport.ABC... 0.02 OrthoFinder output from all 47 species
Solyc06g009290.4.1 PGP21, Solyc06g009290 subfamily ABCB transporter 0.02 OrthoFinder output from all 47 species
Spa_g19381 PGP11 subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g35292 ATPGP4, PGP4, ABCB4, MDR4 subfamily ABCB transporter & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g46427 ATPGP4, PGP4, ABCB4, MDR4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e028117_P001 PGP11, Zm00001e028117 subfamily ABCB transporter 0.02 OrthoFinder output from all 47 species
Zm00001e041087_P002 Zm00001e041087 subfamily ABCB transporter 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006952 defense response IEP HCCA
MF GO:0008171 O-methyltransferase activity IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR011527 ABC1_TM_dom 66 338
IPR011527 ABC1_TM_dom 740 1009
IPR003439 ABC_transporter-like_ATP-bd 1077 1154
IPR003439 ABC_transporter-like_ATP-bd 406 554
No external refs found!