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  5. Sam_g49491

Sam_g49491


Description : not classified & original description: none


Gene families : OG0000118 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000118_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g49491
Cluster HCCA: Cluster_85

Target Alias Description ECC score Gene Family Method Actions
Adi_g006221 ATHMG, HMG, SSRP1, NFD not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g120788 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g124825 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g128789 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g44161 ATHMG, HMG, SSRP1, NFD not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g63812 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g36732 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene44588.t1 NFD2, HMG BETA... DNA bending architectural protein *(HMG-B) & original... 0.02 OrthoFinder output from all 47 species
Azfi_s0003.g007563 NFD2, HMG BETA... DNA bending architectural protein *(HMG-B) & original... 0.03 OrthoFinder output from all 47 species
Azfi_s0132.g049182 NFD2, HMG BETA... not classified & original description: CDS=249-659 0.03 OrthoFinder output from all 47 species
Cba_g71618 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000663.58 ATHMG, HMG, SSRP1, NFD No description available 0.02 OrthoFinder output from all 47 species
Dac_g31445 ATHMG, HMG, SSRP1, NFD not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g43787 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g19258 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g24838 ATHMG, HMG, SSRP1, NFD not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g32302 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g35147 NFD2, HMG BETA... DNA bending architectural protein *(HMG-B) & original... 0.02 OrthoFinder output from all 47 species
Ore_g26780 NFD03, HMGB3, NFD3 DNA bending architectural protein *(HMG-B) & original... 0.02 OrthoFinder output from all 47 species
Pir_g33393 NFD2, HMG BETA... DNA bending architectural protein *(HMG-B) & original... 0.03 OrthoFinder output from all 47 species
Ppi_g22709 NFD2, HMG BETA... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g23094 ATHMG, HMG, SSRP1, NFD not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g23676 NFD2, HMG BETA... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g43308 NFD2, HMG BETA... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g44984 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g02757 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g09873 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR009071 HMG_box_dom 97 163
IPR009071 HMG_box_dom 6 73
No external refs found!