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  5. Sam_g49637

Sam_g49637


Description : component *(COI) of jasmonic acid receptor complex & original description: none


Gene families : OG0000211 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000211_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g49637

Target Alias Description ECC score Gene Family Method Actions
AT2G39940 COI1 RNI-like superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g015381 COI1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g056234 AFB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g03539 COI1 component *(COI) of jasmonic acid receptor complex &... 0.02 OrthoFinder output from all 47 species
Aob_g11099 TIR1 substrate adaptor of SCF E3 ubiquitin ligase *(TIR1/AFB)... 0.02 OrthoFinder output from all 47 species
Aspi01Gene00665.t1 AFB2, Aspi01Gene00665 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene60736.t1 AFB2, Aspi01Gene60736 substrate adaptor of SCF E3 ubiquitin ligase *(TIR1/AFB)... 0.03 OrthoFinder output from all 47 species
Cba_g38223 AFB2 substrate adaptor of SCF E3 ubiquitin ligase *(TIR1/AFB)... 0.03 OrthoFinder output from all 47 species
Ceric.11G069600.1 COI1, Ceric.11G069600 component *(COI) of jasmonic acid receptor complex &... 0.02 OrthoFinder output from all 47 species
Ceric.1Z143900.1 COI1, Ceric.1Z143900 not classified & original description: pacid=50567868... 0.03 OrthoFinder output from all 47 species
Ceric.1Z144000.1 COI1, Ceric.1Z144000 component *(COI) of jasmonic acid receptor complex &... 0.03 OrthoFinder output from all 47 species
GSVIVT01000962001 AFB3 Protein AUXIN SIGNALING F-BOX 2 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
LOC_Os03g15880.4 COI1, LOC_Os03g15880 component COI of jasmonic acid receptor complex 0.02 OrthoFinder output from all 47 species
LOC_Os11g31620.1 AFB2, LOC_Os11g31620 component TIR1/AFB of auxin receptor complex. component... 0.09 OrthoFinder output from all 47 species
Lfl_g06163 AFB2 substrate adaptor of SCF E3 ubiquitin ligase *(TIR1/AFB)... 0.03 OrthoFinder output from all 47 species
MA_10189662g0010 AFB2 Protein AUXIN SIGNALING F-BOX 3 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
MA_646265g0010 COI1 Coronatine-insensitive protein homolog 1a OS=Oryza... 0.03 OrthoFinder output from all 47 species
MA_92309g0010 TIR1 component TIR1/AFB of auxin receptor complex. component... 0.02 OrthoFinder output from all 47 species
Ppi_g15539 AFB2 substrate adaptor of SCF E3 ubiquitin ligase *(TIR1/AFB)... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0032.g010765 AFB2 substrate adaptor of SCF E3 ubiquitin ligase *(TIR1/AFB)... 0.03 OrthoFinder output from all 47 species
Spa_g18052 COI1 component *(COI) of jasmonic acid receptor complex &... 0.02 OrthoFinder output from all 47 species
Spa_g50974 AFB2 substrate adaptor of SCF E3 ubiquitin ligase *(TIR1/AFB)... 0.02 OrthoFinder output from all 47 species
Zm00001e019255_P001 COI1, Zm00001e019255 component COI of jasmonic acid receptor complex 0.02 OrthoFinder output from all 47 species
Zm00001e026935_P001 COI1, Zm00001e026935 component COI of jasmonic acid receptor complex 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0055085 transmembrane transport IEP HCCA
InterPro domains Description Start Stop
IPR041567 COI1_F-box 24 63
IPR041101 Transp_inhibit 84 129
No external refs found!