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  5. Sam_g49817

Sam_g49817


Description : ARF-type transcription factor & original description: none


Gene families : OG0000088 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000088_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g49817

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00025p00198750 ARF19, IAA22,... RNA biosynthesis.transcriptional activation.B3... 0.03 OrthoFinder output from all 47 species
Adi_g024483 ARF19, IAA22, ARF11 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g075709 ARF6 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0006.g010141 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: CDS=1-2961 0.02 OrthoFinder output from all 47 species
GSVIVT01021552001 ARF6 RNA biosynthesis.transcriptional activation.B3... 0.03 OrthoFinder output from all 47 species
GSVIVT01021553001 ARF6 RNA biosynthesis.transcriptional activation.B3... 0.02 OrthoFinder output from all 47 species
GSVIVT01025691001 ARF16 RNA biosynthesis.transcriptional activation.B3... 0.02 OrthoFinder output from all 47 species
GSVIVT01035204001 ARF8, ATARF8 RNA biosynthesis.transcriptional activation.B3... 0.02 OrthoFinder output from all 47 species
GSVIVT01037136001 ARF1 RNA biosynthesis.transcriptional activation.B3... 0.02 OrthoFinder output from all 47 species
LOC_Os04g59430.1 ARF17, LOC_Os04g59430 transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
Len_g20412 ARF6 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
MA_10432528g0010 ARF4 transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
Msp_g10001 ARF6 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g39711 ARF6 transcriptional repressor *(IAA/AUX) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g16843 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc11g069190.2.1 ARF4, Solyc11g069190 transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
Spa_g39677 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e012670_P001 ARF16, Zm00001e012670 transcription factor (ARF) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004222 metalloendopeptidase activity IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
BP GO:0007155 cell adhesion IEP HCCA
InterPro domains Description Start Stop
IPR010525 ARF_dom 258 340
IPR003340 B3_DNA-bd 133 233
No external refs found!