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  5. Sam_g49832

Sam_g49832


Description : pectin methylesterase & original description: none


Gene families : OG0000083 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000083_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g49832
Cluster HCCA: Cluster_36

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00140p00035900 evm_27.TU.AmTr_v1... No description available 0.03 OrthoFinder output from all 47 species
AT5G26810 No alias Pectin lyase-like superfamily protein 0.04 OrthoFinder output from all 47 species
Aev_g18114 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Als_g12395 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Als_g56348 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g58922 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0055.g033955 No alias pectin methylesterase & original description: CDS=387-1493 0.03 OrthoFinder output from all 47 species
Cba_g34624 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.03G061600.1 Ceric.03G061600 pectin methylesterase & original description:... 0.02 OrthoFinder output from all 47 species
Ceric.06G019100.1 Ceric.06G019100 pectin methylesterase & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.11G006300.1 Ceric.11G006300 pectin methylesterase & original description:... 0.02 OrthoFinder output from all 47 species
Ceric.11G006400.1 Ceric.11G006400 pectin methylesterase & original description:... 0.02 OrthoFinder output from all 47 species
Ceric.11G006500.1 Ceric.11G006500 pectin methylesterase & original description:... 0.02 OrthoFinder output from all 47 species
Ceric.11G007600.1 Ceric.11G007600 pectin methylesterase & original description:... 0.02 OrthoFinder output from all 47 species
Ceric.11G007700.1 Ceric.11G007700 pectin methylesterase & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.37G019300.1 Ceric.37G019300 pectin methylesterase & original description:... 0.02 OrthoFinder output from all 47 species
MA_304854g0010 ATPE11, PE11 pectin methylesterase 0.02 OrthoFinder output from all 47 species
Pir_g34115 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g52907 VGD1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g18465 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g31507 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g16248 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0030599 pectinesterase activity IEA Interproscan
BP GO:0042545 cell wall modification IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000070 Pectinesterase_cat 107 388
No external refs found!