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  5. Sam_g50253

Sam_g50253


Description : not classified & original description: none


Gene families : OG0001054 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001054_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g50253
Cluster HCCA: Cluster_66

Target Alias Description ECC score Gene Family Method Actions
Aop_g34288 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g43689 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g55203 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g06886 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g12847 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g37200 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g20241 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g31967 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g40517 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g31256 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g08608 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sam_g17559 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g17586 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sam_g19855 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g25792 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g27013 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g29081 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g29205 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Sam_g29449 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g30500 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Sam_g42969 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g49413 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g50072 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g52214 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004252 serine-type endopeptidase activity IEA Interproscan
BP GO:0006508 proteolysis IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000272 polysaccharide catabolic process IEP HCCA
MF GO:0003968 RNA-dependent RNA polymerase activity IEP HCCA
CC GO:0005576 extracellular region IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006073 cellular glucan metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
MF GO:0008061 chitin binding IEP HCCA
MF GO:0008810 cellulase activity IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009251 glucan catabolic process IEP HCCA
BP GO:0016052 carbohydrate catabolic process IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0030243 cellulose metabolic process IEP HCCA
BP GO:0030245 cellulose catabolic process IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0044042 glucan metabolic process IEP HCCA
BP GO:0044247 cellular polysaccharide catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
BP GO:0044275 cellular carbohydrate catabolic process IEP HCCA
BP GO:0051273 beta-glucan metabolic process IEP HCCA
BP GO:0051275 beta-glucan catabolic process IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
InterPro domains Description Start Stop
IPR001254 Trypsin_dom 44 283
No external refs found!