Sam_g50558


Description : not classified & original description: none


Gene families : OG0001977 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001977_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g50558

Target Alias Description ECC score Gene Family Method Actions
Adi_g103375 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g04377 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene61341.t1 Aspi01Gene61341 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g13066 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_88596g0010 No alias Probable helicase MAGATAMA 3 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Ore_g38225 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc04g072830.4.1 Solyc04g072830 Probable helicase MAGATAMA 3 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Solyc04g072840.3.1 Solyc04g072840 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Zm00001e012950_P003 Zm00001e012950 Probable helicase MAGATAMA 3 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003747 translation release factor activity IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004176 ATP-dependent peptidase activity IEP HCCA
MF GO:0004252 serine-type endopeptidase activity IEP HCCA
MF GO:0004425 indole-3-glycerol-phosphate synthase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006415 translational termination IEP HCCA
MF GO:0008079 translation termination factor activity IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008236 serine-type peptidase activity IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016831 carboxy-lyase activity IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
BP GO:0022411 cellular component disassembly IEP HCCA
BP GO:0032984 protein-containing complex disassembly IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR041677 DNA2/NAM7_AAA_11 672 1021
IPR041679 DNA2/NAM7-like_C 1028 1223
No external refs found!