Lfl_g30418 (ATPCNA1, PCNA1)

Aliases : ATPCNA1, PCNA1

Description : sliding clamp protein *(PCNA) & original description: none

Gene families : OG0002250 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002250_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Lfl_g30418
Cluster	HCCA: Cluster_66

Target	Alias	Description	ECC score	Gene Family Method
AT1G07370	ATPCNA1, PCNA1	proliferating cellular nuclear antigen 1	0.03	OrthoFinder output from all 47 species
Ala_g05666	ATPCNA1, PCNA1	sliding clamp protein *(PCNA) & original description: none	0.05	OrthoFinder output from all 47 species
Als_g07143	ATPCNA1, PCNA1	sliding clamp protein *(PCNA) & original description: none	0.04	OrthoFinder output from all 47 species
Als_g50349	ATPCNA1, PCNA1	sliding clamp protein *(PCNA) & original description: none	0.04	OrthoFinder output from all 47 species
Aop_g11632	ATPCNA1, PCNA1	sliding clamp protein *(PCNA) & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene00975.t1	ATPCNA1, PCNA1,...	sliding clamp protein *(PCNA) & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.21G042200.1	ATPCNA1, PCNA1,...	sliding clamp protein *(PCNA) & original description:...	0.03	OrthoFinder output from all 47 species
Ceric.27G045300.1	ATPCNA1, PCNA1,...	sliding clamp protein *(PCNA) & original description:...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020553.141	ATPCNA1, PCNA1	Cell cycle.interphase.DNA...	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00021319.67	ATPCNA1, PCNA1	Cell cycle.interphase.DNA...	0.01	OrthoFinder output from all 47 species
Dac_g03057	ATPCNA1, PCNA1	sliding clamp protein *(PCNA) & original description: none	0.06	OrthoFinder output from all 47 species
Gb_11143	ATPCNA1, PCNA1	sliding clamp protein (PCNA)	0.03	OrthoFinder output from all 47 species
LOC_Os02g56130.1	PCNA2, ATPCNA2,...	sliding clamp protein (PCNA)	0.03	OrthoFinder output from all 47 species
Len_g11664	ATPCNA1, PCNA1	sliding clamp protein *(PCNA) & original description: none	0.05	OrthoFinder output from all 47 species
Msp_g09130	ATPCNA1, PCNA1	sliding clamp protein *(PCNA) & original description: none	0.05	OrthoFinder output from all 47 species
Nbi_g07886	ATPCNA1, PCNA1	sliding clamp protein *(PCNA) & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g26451	No alias	sliding clamp protein *(PCNA) & original description: none	0.02	OrthoFinder output from all 47 species
Solyc06g076660.3.1	PCNA2, ATPCNA2,...	sliding clamp protein (PCNA)	0.04	OrthoFinder output from all 47 species
Spa_g12144	ATPCNA1, PCNA1	sliding clamp protein *(PCNA) & original description: none	0.06	OrthoFinder output from all 47 species
Spa_g12145	ATPCNA1, PCNA1	sliding clamp protein *(PCNA) & original description: none	0.05	OrthoFinder output from all 47 species
Spa_g51877	ATPCNA1, PCNA1	sliding clamp protein *(PCNA) & original description: none	0.05	OrthoFinder output from all 47 species
Tin_g12734	ATPCNA1, PCNA1	sliding clamp protein *(PCNA) & original description: none	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006275	regulation of DNA replication	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051052	regulation of DNA metabolic process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000796	condensin complex	IEP	HCCA
BP	GO:0006996	organelle organization	IEP	HCCA
BP	GO:0007076	mitotic chromosome condensation	IEP	HCCA
MF	GO:0008017	microtubule binding	IEP	HCCA
MF	GO:0008092	cytoskeletal protein binding	IEP	HCCA
MF	GO:0015631	tubulin binding	IEP	HCCA
BP	GO:0022402	cell cycle process	IEP	HCCA
BP	GO:0030261	chromosome condensation	IEP	HCCA
CC	GO:0044815	DNA packaging complex	IEP	HCCA
BP	GO:0051276	chromosome organization	IEP	HCCA
BP	GO:1903047	mitotic cell cycle process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR022648	Pr_cel_nuc_antig_N	1	125
IPR022649	Pr_cel_nuc_antig_C	127	254

External Links

No external refs found!

Lfl_g30418 (ATPCNA1, PCNA1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation