Sam_g51209


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g51209

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00019p00110050 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
AMTR_s00077p00031710 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g27610... 0.03 OrthoFinder output from all 47 species
AT1G18485 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
AT1G31010 OSB4 organellar single-stranded DNA binding protein 4 0.02 OrthoFinder output from all 47 species
AT1G31430 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.02 OrthoFinder output from all 47 species
AT3G22150 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
AT5G13230 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
AT5G66520 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g003781 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g005234 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g080646 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g116613 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g23915 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g10403 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g04279 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g05696 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g06645 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g18939 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g21031 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g26694 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g30899 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g61873 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g06037 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g09077 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g12840 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g13877 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g22677 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g28220 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g40546 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g17350 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g23385 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene66061.t1 Aspi01Gene66061 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0005.g009143 No alias not classified & original description: CDS=1-4677 0.02 OrthoFinder output from all 47 species
Azfi_s0005.g009227 No alias not classified & original description: CDS=1-1950 0.04 OrthoFinder output from all 47 species
Azfi_s0015.g013865 No alias not classified & original description: CDS=1-1626 0.04 OrthoFinder output from all 47 species
Azfi_s0045.g029773 No alias not classified & original description: CDS=1-489 0.04 OrthoFinder output from all 47 species
Azfi_s0138.g051109 No alias not classified & original description: CDS=1-2523 0.04 OrthoFinder output from all 47 species
Azfi_s0144.g051584 No alias not classified & original description: CDS=1-1965 0.02 OrthoFinder output from all 47 species
Cba_g06492 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g06508 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g07719 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g07735 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g11319 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g19886 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g20779 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g20862 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g24173 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g66834 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g71700 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g75325 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.01G084700.1 VAC1, ECB2,... not classified & original description: pacid=50592179... 0.02 OrthoFinder output from all 47 species
Ceric.01G127400.1 VAC1, ECB2,... not classified & original description: pacid=50592739... 0.04 OrthoFinder output from all 47 species
Ceric.10G062000.1 Ceric.10G062000 ssDNA-binding protein *(OSB) & original description:... 0.02 OrthoFinder output from all 47 species
Ceric.22G078800.1 Ceric.22G078800 not classified & original description: pacid=50613807... 0.02 OrthoFinder output from all 47 species
Ceric.23G060300.1 CRR22, Ceric.23G060300 not classified & original description: pacid=50610371... 0.02 OrthoFinder output from all 47 species
Ceric.28G037300.1 Ceric.28G037300 not classified & original description: pacid=50570602... 0.03 OrthoFinder output from all 47 species
Dac_g18994 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g22336 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g23056 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g30165 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g06340 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g06433 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g38672 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g47811 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g51775 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g03977 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g05757 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g05954 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g07956 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g12101 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g15735 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g23577 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g25743 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g28915 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g50967 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g13211 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01005260001 No alias Pentatricopeptide repeat-containing protein At5g66520... 0.02 OrthoFinder output from all 47 species
GSVIVT01005577001 EMB2261 RNA processing.organelle machineries.RNA... 0.03 OrthoFinder output from all 47 species
GSVIVT01017823001 No alias Pentatricopeptide repeat-containing protein At2g36980,... 0.02 OrthoFinder output from all 47 species
GSVIVT01031251001 LPA66 Pentatricopeptide repeat-containing protein At5g48910... 0.02 OrthoFinder output from all 47 species
GSVIVT01033190001 OTP82 Pentatricopeptide repeat-containing protein At5g66520... 0.02 OrthoFinder output from all 47 species
LOC_Os03g44210.2 LOC_Os03g44210 RNA editing factor (SEL1/PDM1) 0.02 OrthoFinder output from all 47 species
Len_g03400 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g03874 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g04722 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g05435 CRR22 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Len_g17769 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g18066 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g18872 CRR22 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Len_g33754 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g44429 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g47762 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g28057 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g28067 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g29078 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g38055 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_10138132g0010 No alias Pentatricopeptide repeat-containing protein At3g02330,... 0.02 OrthoFinder output from all 47 species
MA_10317671g0010 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.02 OrthoFinder output from all 47 species
Msp_g12146 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g14080 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g04397 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g04844 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g08794 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g15699 CRR22 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g18716 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g38630 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g39306 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g02390 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g03052 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g07300 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g12697 REME1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g14266 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g19382 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g29175 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g02784 OSB1 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g13599 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g18895 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g63660 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g63807 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g30635 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g04692 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g07569 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g10348 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g42752 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g59920 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0007.g003613 No alias not classified & original description: CDS=279-3914 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0013.g005911 EMB2758 not classified & original description: CDS=1-2163 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0015.g006560 No alias not classified & original description: CDS=1-2253 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0019.g007679 OTP86 not classified & original description: CDS=1-4497 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0019.g007869 No alias not classified & original description: CDS=1-2253 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0022.g008680 No alias not classified & original description: CDS=1-2187 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0029.g010154 No alias not classified & original description: CDS=1-2595 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0035.g011483 No alias not classified & original description: CDS=1-2124 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0044.g013068 No alias not classified & original description: CDS=1-1464 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0059.g015029 No alias not classified & original description: CDS=1-2931 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0061.g015358 No alias not classified & original description: CDS=223-2631 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0080.g017928 No alias not classified & original description: CDS=112-2919 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0091.g018780 No alias not classified & original description: CDS=1-2574 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0110.g020618 REME1 not classified & original description: CDS=24-1478 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0231.g026446 No alias not classified & original description: CDS=292-2991 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0260.g026882 No alias not classified & original description: CDS=1-687 0.03 OrthoFinder output from all 47 species
Sam_g52322 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc04g076800.3.1 CRR22, Solyc04g076800 Pentatricopeptide repeat-containing protein At4g13650... 0.02 OrthoFinder output from all 47 species
Spa_g07054 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g09530 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g50449 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g53369 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g08973 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g16347 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g19996 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g27705 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e010182_P001 Zm00001e010182 Pentatricopeptide repeat-containing protein At2g36980,... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
MF GO:0008236 serine-type peptidase activity IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 16 38
IPR002885 Pentatricopeptide_repeat 321 348
IPR002885 Pentatricopeptide_repeat 41 88
IPR002885 Pentatricopeptide_repeat 144 190
IPR002885 Pentatricopeptide_repeat 245 294
No external refs found!