Sam_g51779


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g51779

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00270380 OTP86,... RNA processing.organelle machineries.RNA... 0.03 OrthoFinder output from all 47 species
AMTR_s00029p00062590 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein DOT4,... 0.03 OrthoFinder output from all 47 species
AT3G62890 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
AT4G33170 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
AT5G44785 OSB3 organellar single-stranded DNA binding protein 3 0.02 OrthoFinder output from all 47 species
Adi_g003181 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g005632 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g005698 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g007548 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g013821 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g022147 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g033714 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g034839 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g036547 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g036862 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g075417 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g086894 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g088950 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g099342 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g06254 PTAC9, OSB2 ssDNA-binding protein *(OSB) & original description: none 0.01 OrthoFinder output from all 47 species
Aev_g09730 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g42281 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g42385 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g48329 OSB3 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g35641 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g28460 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g30770 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g16384 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g23679 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g28416 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g28532 OTP86 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g43404 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene25991.t2 Aspi01Gene25991 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene30517.t1 CRR22, Aspi01Gene30517 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene50511.t1 Aspi01Gene50511 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene71401.t2 Aspi01Gene71401 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0065.g035815 No alias not classified & original description: CDS=1-2163 0.02 OrthoFinder output from all 47 species
Azfi_s0544.g076391 No alias not classified & original description: CDS=1-906 0.02 OrthoFinder output from all 47 species
Azfi_s1396.g102567 No alias not classified & original description: CDS=1-1371 0.02 OrthoFinder output from all 47 species
Cba_g05154 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g06593 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g07724 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g07750 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g07785 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g14131 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g14728 OTP86 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g19869 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g35189 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g44924 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g67233 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g67460 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g67697 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g74872 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g05763 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g19103 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g08454 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g12105 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g14626 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g36025 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g38425 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g45110 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g50558 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g02955 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g09625 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g15555 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g15722 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g26014 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g28695 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g50444 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g03278 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g05389 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g12777 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g14104 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g18287 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g18961 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g18962 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g24370 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g25859 REME1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g26572 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g29833 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g44800 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g54485 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g54502 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g54953 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g59693 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_10317671g0010 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.01 OrthoFinder output from all 47 species
MA_10436932g0010 No alias ssDNA-binding protein (OSB). TAC9 cofactor of... 0.02 OrthoFinder output from all 47 species
MA_597g0020 DOT4 Pentatricopeptide repeat-containing protein At4g02750... 0.01 OrthoFinder output from all 47 species
Msp_g07558 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g28743 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g28772 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g32054 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g33667 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g36814 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g40180 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g40949 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g46847 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g05483 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g06724 OTP86 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g38465 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g14351 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Pir_g02846 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g02967 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g04310 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g35144 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g57416 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g57540 OTP86 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g61472 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g03458 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g03470 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g30091 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g06375 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g14956 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g49226 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0013.g005702 No alias not classified & original description: CDS=46-1077 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0016.g006762 No alias nucleoporin of nuclear pore complex *(NUP98) & original... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0020.g008098 CRR22 not classified & original description: CDS=1-2784 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0032.g010805 VAC1, ECB2, ATECB2 not classified & original description: CDS=294-2756 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0040.g012420 No alias not classified & original description: CDS=519-2384 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0044.g012960 No alias not classified & original description: CDS=516-2783 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0072.g016963 No alias not classified & original description: CDS=1-2211 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0100.g019669 OTP84 not classified & original description: CDS=1-1971 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0157.g023714 No alias not classified & original description: CDS=1-2772 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0157.g023739 No alias not classified & original description: CDS=1-3168 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0262.g026911 REME1 not classified & original description: CDS=1-1512 0.02 OrthoFinder output from all 47 species
Sam_g08102 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g12346 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g16791 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g29713 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g43221 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc04g082870.1.1 Solyc04g082870 Pentatricopeptide repeat-containing protein At1g25360... 0.03 OrthoFinder output from all 47 species
Spa_g02637 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g03178 REME1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g04185 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g53145 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g55588 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g55658 MEF19 not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
CC GO:0005787 signal peptidase complex IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0006465 signal peptide processing IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
BP GO:0016485 protein processing IEP HCCA
BP GO:0051604 protein maturation IEP HCCA
CC GO:0140534 endoplasmic reticulum protein-containing complex IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
CC GO:1905368 peptidase complex IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 89 136
IPR002885 Pentatricopeptide_repeat 293 342
IPR002885 Pentatricopeptide_repeat 192 238
IPR002885 Pentatricopeptide_repeat 368 390
IPR002885 Pentatricopeptide_repeat 166 187
No external refs found!