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  5. Sam_g52449

Sam_g52449


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g52449
Cluster HCCA: Cluster_16

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00016p00259690 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g46460,... 0.03 OrthoFinder output from all 47 species
AMTR_s00025p00155620 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g33170... 0.05 OrthoFinder output from all 47 species
AMTR_s00030p00109240 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
AMTR_s00040p00174700 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
AMTR_s00066p00062930 EMB2261,... Pentatricopeptide repeat-containing protein At3g49170,... 0.05 OrthoFinder output from all 47 species
AMTR_s00071p00184210 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
AMTR_s00439p00011030 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g04780,... 0.03 OrthoFinder output from all 47 species
AT1G31920 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
AT1G47580 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
AT2G21090 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g097219 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g27648 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g42176 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g46724 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g04005 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g24094 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g05672 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g02869 OSB3 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g12691 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g20395 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g28175 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g37979 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g43028 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g23385 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g23671 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene02996.t1 CRR2, Aspi01Gene02996 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene18019.t1 Aspi01Gene18019 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene25991.t1 CRR22, Aspi01Gene25991 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene31476.t1 Aspi01Gene31476 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene43499.t1 REME1, Aspi01Gene43499 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene70770.t1 Aspi01Gene70770 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0006.g010319 No alias not classified & original description: CDS=1-1401 0.05 OrthoFinder output from all 47 species
Azfi_s0141.g051350 No alias not classified & original description: CDS=124-2304 0.03 OrthoFinder output from all 47 species
Cba_g06595 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g06836 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g07698 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g19910 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g67913 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g71700 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.11G067400.1 Ceric.11G067400 not classified & original description: pacid=50595438... 0.03 OrthoFinder output from all 47 species
Ceric.15G051800.1 VAC1, ECB2,... not classified & original description: pacid=50639747... 0.03 OrthoFinder output from all 47 species
Dac_g16073 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g30165 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g42860 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g35954 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g40867 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g45215 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g16094 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g22634 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g28404 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g36360 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g50967 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01031251001 LPA66 Pentatricopeptide repeat-containing protein At5g48910... 0.03 OrthoFinder output from all 47 species
LOC_Os02g46980.1 LOC_Os02g46980 Pentatricopeptide repeat-containing protein At1g31920... 0.02 OrthoFinder output from all 47 species
LOC_Os04g02850.1 OTP84, LOC_Os04g02850 RNA editing factor (OTP84) 0.02 OrthoFinder output from all 47 species
LOC_Os07g02280.1 LOC_Os07g02280 RNA editing factor (OTP80) 0.02 OrthoFinder output from all 47 species
Len_g05253 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g05435 CRR22 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Len_g28860 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g41147 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g04966 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g06713 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g07038 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g08420 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g08720 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g12624 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g14850 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g17292 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g29078 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g32453 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g03782 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g04943 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g06230 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g06798 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g08298 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g13575 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g13990 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g32642 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g07300 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g12907 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g19780 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g30748 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g34092 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g41642 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g58489 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g63391 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g18869 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g54649 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000561 No alias not classified & original description: CDS=191-3046 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002209 No alias not classified & original description: CDS=347-2416 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0007.g003613 No alias not classified & original description: CDS=279-3914 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0009.g004510 No alias not classified & original description: CDS=121-2523 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0009.g004577 No alias not classified & original description: CDS=1-1743 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0013.g005856 No alias not classified & original description: CDS=1-2292 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0019.g007679 OTP86 not classified & original description: CDS=1-4497 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0021.g008323 No alias not classified & original description: CDS=476-3628 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0073.g017091 No alias not classified & original description: CDS=1-3111 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0080.g017928 No alias not classified & original description: CDS=112-2919 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0093.g019001 No alias not classified & original description: CDS=1-2865 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0096.g019337 No alias not classified & original description: CDS=1-3108 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0117.g021130 No alias not classified & original description: CDS=1-2961 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0140.g022672 No alias not classified & original description: CDS=1-3558 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0144.g022950 EMB2261 not classified & original description: CDS=1-2124 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0144.g022971 No alias not classified & original description: CDS=343-1173 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0206.g025782 No alias not classified & original description: CDS=1-2394 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0231.g026446 No alias not classified & original description: CDS=292-2991 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0321.g027231 No alias substrate adaptor of SCF E3 ubiquitin ligase complex &... 0.03 OrthoFinder output from all 47 species
Sam_g03385 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g16066 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo107947 REME1 Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
Smo138948 No alias Pentatricopeptide repeat-containing protein At3g26782,... 0.03 OrthoFinder output from all 47 species
Spa_g10323 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g20079 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g50618 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e039026_P001 OTP82, Zm00001e039026 Pentatricopeptide repeat-containing protein At5g48910... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0005506 iron ion binding IEP HCCA
MF GO:0005509 calcium ion binding IEP HCCA
BP GO:0006629 lipid metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008374 O-acyltransferase activity IEP HCCA
BP GO:0008610 lipid biosynthetic process IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
MF GO:0016746 acyltransferase activity IEP HCCA
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR032867 DYW_dom 883 956
IPR002885 Pentatricopeptide_repeat 219 241
IPR002885 Pentatricopeptide_repeat 147 173
IPR002885 Pentatricopeptide_repeat 420 444
IPR002885 Pentatricopeptide_repeat 245 291
IPR002885 Pentatricopeptide_repeat 547 593
IPR002885 Pentatricopeptide_repeat 446 492
IPR002885 Pentatricopeptide_repeat 647 695
No external refs found!