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  5. Sam_g52552

Sam_g52552


Description : subgroup ERF-IV/DREB2 transcription factor & original description: none


Gene families : OG0000003 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g52552

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00098700 ERF110,... RNA biosynthesis.transcriptional activation.AP2/ERF... 0.02 OrthoFinder output from all 47 species
AMTR_s00025p00249140 evm_27.TU.AmTr_v1... Cell wall.cutin and suberin.biosynthesis... 0.02 OrthoFinder output from all 47 species
AT1G49120 No alias Integrase-type DNA-binding superfamily protein 0.02 OrthoFinder output from all 47 species
Ala_g01005 ERF7, ATERF7, ATERF-7 subgroup ERF-VIII transcription factor & original... 0.02 OrthoFinder output from all 47 species
Als_g16147 ERF7, ATERF7, ATERF-7 subgroup ERF-VIII transcription factor & original... 0.03 OrthoFinder output from all 47 species
Als_g18227 ERF72, EBP, ATEBP, RAP2.3 transcription factor component *(HRE/RAP2.12) of... 0.02 OrthoFinder output from all 47 species
Als_g27070 RAP2.12 transcription factor component *(HRE/RAP2.12) of... 0.02 OrthoFinder output from all 47 species
Aob_g18891 HRE2 subgroup ERF-VI transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g30583 LEP not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g01204 No alias subgroup ERF-I transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g12983 ATERF8, ATERF-8, ERF8 subgroup ERF-VIII transcription factor & original... 0.03 OrthoFinder output from all 47 species
Aop_g15011 DEAR3 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g22458 RAP2.9, DEAR5 subgroup ERF-II transcription factor *(ERF16/17/18) &... 0.02 OrthoFinder output from all 47 species
Aspi01Gene00047.t1 TINY2, Aspi01Gene00047 subgroup ERF-III transcription factor & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene01047.t1 Aspi01Gene01047 subgroup ERF-V transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene23568.t1 CRF3, Aspi01Gene23568 subgroup ERF-VI transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene24401.t1 DEAR2, Aspi01Gene24401 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene25575.t1 DEAR1, CEJ1,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene49723.t1 HRE2, Aspi01Gene49723 transcription factor component *(HRE/RAP2.12) of... 0.03 OrthoFinder output from all 47 species
Aspi01Gene56616.t1 DEAR3, Aspi01Gene56616 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene62684.t2 DREB26, Aspi01Gene62684 subgroup ERF-II transcription factor *(ERF16/17/18) &... 0.02 OrthoFinder output from all 47 species
Aspi01Gene69728.t1 RAP2.2, Aspi01Gene69728 transcription factor component *(HRE/RAP2.12) of... 0.03 OrthoFinder output from all 47 species
Azfi_s0001.g000091 ATERF-9, ERF9, ATERF9 not classified & original description: CDS=1-585 0.02 OrthoFinder output from all 47 species
Azfi_s0078.g038117 HRE2 transcription factor component *(HRE/RAP2.12) of... 0.03 OrthoFinder output from all 47 species
Cba_g10614 ATERF12, ERF12 subgroup ERF-VIII transcription factor & original... 0.03 OrthoFinder output from all 47 species
Cba_g23893 RAP2.2 transcription factor component *(HRE/RAP2.12) of... 0.03 OrthoFinder output from all 47 species
Cba_g35071 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.15G043800.1 HRE2, Ceric.15G043800 transcription factor component *(HRE/RAP2.12) of... 0.02 OrthoFinder output from all 47 species
Dac_g13865 ERF7, ATERF7, ATERF-7 subgroup ERF-VIII transcription factor & original... 0.02 OrthoFinder output from all 47 species
Dac_g38440 RAP2.11 transcription factor *(ERN1) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g01289 ERF110 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g12384 DEAR1, CEJ1, ATERF#011 subgroup ERF-IV/DREB2 transcription factor & original... 0.02 OrthoFinder output from all 47 species
Dde_g08064 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g08401 No alias subgroup ERF-IV/DREB2 transcription factor & original... 0.02 OrthoFinder output from all 47 species
Ehy_g11677 No alias subgroup ERF-V transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g25390 HRE2 transcription factor component *(HRE/RAP2.12) of... 0.02 OrthoFinder output from all 47 species
GSVIVT01002262001 RAP2.4 RNA biosynthesis.transcriptional activation.AP2/ERF... 0.03 OrthoFinder output from all 47 species
Gb_39497 ERF7, ATERF7, ATERF-7 transcription factor (ERF) 0.02 OrthoFinder output from all 47 species
LOC_Os01g07120.1 DREB2A, DREB2,... transcription factor (DREB) 0.02 OrthoFinder output from all 47 species
LOC_Os02g52670.1 ERF110, LOC_Os02g52670 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
LOC_Os03g64260.1 ERF1, ATERF1,... transcription factor (ERF) 0.03 OrthoFinder output from all 47 species
LOC_Os10g41130.1 LOC_Os10g41130 transcription factor (DREB) 0.02 OrthoFinder output from all 47 species
Lfl_g02762 ATERF12, ERF12 subgroup ERF-VIII transcription factor & original... 0.03 OrthoFinder output from all 47 species
Lfl_g13705 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_502153g0010 ATERF-9, ERF9, ATERF9 transcription factor (ERF) 0.02 OrthoFinder output from all 47 species
MA_5805979g0010 ERF-1, ATERF-1 Ethylene-responsive transcription factor 1A... 0.03 OrthoFinder output from all 47 species
MA_9588449g0010 ERF1, ATERF1 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Mp7g09350.1 ERF-1, ATERF-1 transcription factor (ERF) 0.02 OrthoFinder output from all 47 species
Nbi_g01764 ERF7, ATERF7, ATERF-7 subgroup ERF-VIII transcription factor & original... 0.03 OrthoFinder output from all 47 species
Ore_g11403 RAP2.6 subgroup ERF-VI transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g21499 No alias cutin and suberin biosynthesis transcription factor... 0.03 OrthoFinder output from all 47 species
Ore_g28007 TMO3, CRF2 subgroup ERF-VI transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g08363 ATERF3, ERF3 subgroup ERF-VIII transcription factor & original... 0.02 OrthoFinder output from all 47 species
Pnu_g26646 RAP2.2 transcription factor component *(HRE/RAP2.12) of... 0.04 OrthoFinder output from all 47 species
Pnu_g27039 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g32187 No alias subgroup ERF-IV/DREB2 transcription factor & original... 0.02 OrthoFinder output from all 47 species
Solyc03g026280.3.1 DREB1A, ATCBF3,... transcription factor (DREB). transcription factor (CBF/DREB1) 0.02 OrthoFinder output from all 47 species
Solyc03g124110.2.1 DREB1A, ATCBF3,... transcription factor (DREB). transcription factor (CBF/DREB1) 0.02 OrthoFinder output from all 47 species
Solyc10g006130.1.1 ATERF3, ERF3,... transcription factor (ERF) 0.02 OrthoFinder output from all 47 species
Solyc12g049560.2.1 RAP2.2, Solyc12g049560 transcription factor (ERF) 0.04 OrthoFinder output from all 47 species
Tin_g13149 ATERF-9, ERF9, ATERF9 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g30387 ATERF12, ERF12 subgroup ERF-VIII transcription factor & original... 0.03 OrthoFinder output from all 47 species
Zm00001e041533_P001 ERF38, ATERF38,... transcription factor (DREB) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEA Interproscan
BP GO:0006355 regulation of DNA-templated transcription IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0005516 calmodulin binding IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016840 carbon-nitrogen lyase activity IEP HCCA
MF GO:0016843 amine-lyase activity IEP HCCA
MF GO:0016844 strictosidine synthase activity IEP HCCA
InterPro domains Description Start Stop
IPR001471 AP2/ERF_dom 112 162
No external refs found!