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  5. Sam_g52630

Sam_g52630


Description : RING-H2-class CTL-subclass E3 ubiquitin ligase & original description: none


Gene families : OG0000374 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000374_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g52630
Cluster HCCA: Cluster_123

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00045p00133270 evm_27.TU.AmTr_v1... No description available 0.02 OrthoFinder output from all 47 species
Adi_g016488 No alias RING-H2-class CTL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Als_g16604 No alias regulatory E3 ubiquitin ligase (MREL/JUL) of microtubule... 0.03 OrthoFinder output from all 47 species
Ceric.26G058500.1 Ceric.26G058500 RING-H2-class CTL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Dcu_g48448 No alias RING-H2-class CTL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
GSVIVT01022110001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 OrthoFinder output from all 47 species
LOC_Os01g47740.1 LOC_Os01g47740 Probable E3 ubiquitin-protein ligase ZFP1 OS=Oryza... 0.02 OrthoFinder output from all 47 species
Lfl_g29258 No alias RING-H2-class CTL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
MA_35916g0010 No alias Probable E3 ubiquitin-protein ligase HIP1 OS=Oryza... 0.03 OrthoFinder output from all 47 species
Nbi_g04359 No alias RING-H2-class CTL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0075.g017397 No alias RING-H2-class CTL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Solyc07g062720.3.1 Solyc07g062720 Probable E3 ubiquitin-protein ligase ZFP1 OS=Oryza... 0.02 OrthoFinder output from all 47 species
Solyc10g007140.3.1 Solyc10g007140 Probable E3 ubiquitin-protein ligase ZFP1 OS=Oryza... 0.02 OrthoFinder output from all 47 species
Spa_g08574 No alias regulatory E3 ubiquitin ligase (MREL/JUL) of microtubule... 0.04 OrthoFinder output from all 47 species
Spa_g26367 No alias RING-H2-class CTL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Tin_g03781 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e013672_P001 Zm00001e013672 Probable E3 ubiquitin-protein ligase HIP1 OS=Oryza... 0.01 OrthoFinder output from all 47 species
Zm00001e028021_P003 Zm00001e028021 Probable E3 ubiquitin-protein ligase ZFP1 OS=Oryza... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004134 4-alpha-glucanotransferase activity IEP HCCA
MF GO:0004650 polygalacturonase activity IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
MF GO:0009975 cyclase activity IEP HCCA
MF GO:0009976 tocopherol cyclase activity IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
MF GO:0030599 pectinesterase activity IEP HCCA
BP GO:0042545 cell wall modification IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
MF GO:0046983 protein dimerization activity IEP HCCA
MF GO:0052689 carboxylic ester hydrolase activity IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
BP GO:0071555 cell wall organization IEP HCCA
InterPro domains Description Start Stop
IPR001841 Znf_RING 608 650
No external refs found!