Cba_g01358 (DCL1, CAF, EMB76,...)

Aliases : DCL1, CAF, EMB76, SIN1, ATDCL1, EMB60, SUS1, ASU1

Description : endoribonuclease component *(DCL1) of DCL1-HYL1 miRNA biogenesis complex & original description: none

Gene families : OG0000378 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000378_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cba_g01358

Target	Alias	Description	ECC score	Gene Family Method
Adi_g010424	DCL4, ATDCL4	endoribonuclease (DCL4) of transacting siRNA pathway &...	0.04	OrthoFinder output from all 47 species
Adi_g068389	No alias	not classified & original description: none	0.06	OrthoFinder output from all 47 species
Aev_g37944	DCL4, ATDCL4	endoribonuclease (DCL4) of transacting siRNA pathway &...	0.03	OrthoFinder output from all 47 species
Als_g31913	DCL4, ATDCL4	endoribonuclease (DCL4) of transacting siRNA pathway &...	0.03	OrthoFinder output from all 47 species
Aspi01Gene32280.t1	ATDCL2, DCL2,...	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene32281.t1	DCL4, ATDCL4,...	endoribonuclease (DCL4) of transacting siRNA pathway &...	0.03	OrthoFinder output from all 47 species
Aspi01Gene32282.t1	DCL4, ATDCL4,...	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Aspi01Gene47448.t2	DCL1, CAF,...	not classified & original description: none	0.07	OrthoFinder output from all 47 species
Aspi01Gene47448.t3	DCL1, CAF,...	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene59762.t1	DCL1, CAF,...	endoribonuclease component *(DCL1) of DCL1-HYL1 miRNA...	0.08	OrthoFinder output from all 47 species
Cba_g38723	DCL4, ATDCL4	endoribonuclease (DCL2) of transacting siRNA pathway &...	0.08	OrthoFinder output from all 47 species
Dde_g08114	DCL4, ATDCL4	endoribonuclease (DCL4) of transacting siRNA pathway &...	0.02	OrthoFinder output from all 47 species
Ehy_g16399	ATDCL2, DCL2	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Msp_g10412	DCL1, CAF,...	endoribonuclease component *(DCL1) of DCL1-HYL1 miRNA...	0.06	OrthoFinder output from all 47 species
Nbi_g15966	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g25122	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g54675	ATDCL2, DCL2	not classified & original description: none	0.07	OrthoFinder output from all 47 species
Sam_g09089	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g11612	No alias	endoribonuclease component *(DCL1) of DCL1-HYL1 miRNA...	0.02	OrthoFinder output from all 47 species
Sam_g20078	No alias	not classified & original description: none	0.06	OrthoFinder output from all 47 species
Sam_g34444	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g39235	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Sam_g39708	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g52073	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004518	nuclease activity	None	Extended
MF	GO:0004519	endonuclease activity	None	Extended
MF	GO:0004521	endoribonuclease activity	None	Extended
MF	GO:0004525	ribonuclease III activity	IEA	Interproscan
MF	GO:0004540	ribonuclease activity	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
MF	GO:0016891	endoribonuclease activity, producing 5'-phosphomonoesters	None	Extended
MF	GO:0016893	endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	None	Extended
MF	GO:0032296	double-stranded RNA-specific ribonuclease activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004497	monooxygenase activity	IEP	HCCA
MF	GO:0005506	iron ion binding	IEP	HCCA
MF	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	IEP	HCCA
MF	GO:0020037	heme binding	IEP	HCCA
MF	GO:0046906	tetrapyrrole binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR006935	Helicase/UvrB_N	294	463
IPR003100	PAZ_dom	1260	1390
IPR000999	RNase_III_dom	1659	1772
IPR000999	RNase_III_dom	1427	1583
IPR001650	Helicase_C	700	817

External Links

No external refs found!

Cba_g01358 (DCL1, CAF, EMB76,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation