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  5. Cba_g02717

Cba_g02717


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g02717

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00019p00240430 OSB3,... RNA biosynthesis.organelle machineries.RNA polymerase... 0.02 OrthoFinder output from all 47 species
AMTR_s00068p00031610 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
AT1G18485 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
AT1G47580 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 OrthoFinder output from all 47 species
AT3G08820 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 OrthoFinder output from all 47 species
AT4G18520 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g055474 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g101241 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g23848 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g23888 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g14718 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g05094 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g18452 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g18507 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g19869 LPA66 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g26681 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g26781 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g30828 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g39732 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g54166 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g26992 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g27221 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g27296 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g27890 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g27910 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g30519 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g13687 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g16691 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g23795 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g35556 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene30841.t1 OTP82, Aspi01Gene30841 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0028.g024007 No alias not classified & original description: CDS=1-1332 0.03 OrthoFinder output from all 47 species
Azfi_s0283.g063049 OTP86 ssDNA-binding protein *(OSB) & original description: CDS=1-2283 0.03 OrthoFinder output from all 47 species
Azfi_s1396.g102567 No alias not classified & original description: CDS=1-1371 0.02 OrthoFinder output from all 47 species
Cba_g06233 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g17225 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g19293 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.05G093000.1 Ceric.05G093000 not classified & original description: pacid=50577993... 0.02 OrthoFinder output from all 47 species
Ceric.14G059200.1 Ceric.14G059200 not classified & original description: pacid=50634117... 0.03 OrthoFinder output from all 47 species
Ceric.28G018400.1 Ceric.28G018400 not classified & original description: pacid=50571000... 0.04 OrthoFinder output from all 47 species
Ceric.30G071100.1 Ceric.30G071100 not classified & original description: pacid=50608720... 0.03 OrthoFinder output from all 47 species
Ceric.39G046500.1 Ceric.39G046500 not classified & original description: pacid=50582543... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001657.6 No alias No description available 0.02 OrthoFinder output from all 47 species
Dac_g04509 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g05085 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g25047 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g27210 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g30161 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g30267 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g36894 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g32689 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g46646 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g09099 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g51669 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g26389 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Gb_39298 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.04 OrthoFinder output from all 47 species
LOC_Os10g40920.1 LOC_Os10g40920 RNA editing factor (MEF13) 0.03 OrthoFinder output from all 47 species
LOC_Os12g01850.1 LOC_Os12g01850 Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
Len_g20208 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g25856 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07103 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g16404 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g31355 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g32854 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g03152 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g06349 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g15026 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g34215 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g34481 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g46847 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g24821 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g37890 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g01677 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g01995 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g06978 OTP86 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g07049 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g12589 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g47021 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g63652 VAC1, ECB2, ATECB2 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g04532 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g16172 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g26402 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g03921 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g15472 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g32272 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g39360 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g53970 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g56487 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g59188 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0003.g002023 No alias not classified & original description: CDS=1-2592 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0033.g011031 No alias not classified & original description: CDS=1-2574 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0036.g011714 VAC1, ECB2, ATECB2 not classified & original description: CDS=1-2064 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0055.g014492 No alias not classified & original description: CDS=1-2247 0.03 OrthoFinder output from all 47 species
Sam_g08926 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g29237 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g33599 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g48011 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g52322 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo228785 No alias Pentatricopeptide repeat-containing protein At2g33680... 0.03 OrthoFinder output from all 47 species
Smo83339 CRR22 Pentatricopeptide repeat-containing protein At3g12770... 0.03 OrthoFinder output from all 47 species
Smo92008 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.03 OrthoFinder output from all 47 species
Spa_g01739 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g05335 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g10134 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g12249 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g45719 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g06120 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g31074 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e036537_P001 Zm00001e036537 Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0016746 acyltransferase activity IEP HCCA
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 270 318
IPR002885 Pentatricopeptide_repeat 168 215
IPR002885 Pentatricopeptide_repeat 573 621
IPR002885 Pentatricopeptide_repeat 372 418
IPR002885 Pentatricopeptide_repeat 472 520
IPR002885 Pentatricopeptide_repeat 648 672
IPR002885 Pentatricopeptide_repeat 447 471
IPR002885 Pentatricopeptide_repeat 42 69
IPR002885 Pentatricopeptide_repeat 70 99
IPR002885 Pentatricopeptide_repeat 245 269
IPR002885 Pentatricopeptide_repeat 346 369
IPR046848 E_motif 691 747
No external refs found!